Literature DB >> 26550841

Ab Initio MD Simulations of the Brønsted Acidity of Glutathione in Aqueous Solutions: Predicting pKa Shifts of the Cysteine Residue.

Anil Kumar Tummanapelli1, Sukumaran Vasudevan1.   

Abstract

The tripeptide glutathione (GSH) is one of the most abundant peptides and the major repository for nonprotein sulfur in both animal and plant cells. It plays a critical role in intracellular oxidative stress management by the reversible formation of glutathione disulfide with the thiol-disulfide pair acting as a redox buffer. The state of charge of the ionizable groups of GSH can influence the redox couple, and hence the pKa value of the cysteine residue of GSH is critical to its functioning. Here we report ab initio Car-Parrinello molecular dynamics simulations of glutathione solvated by 200 water molecules, all of which are considered in the simulation. We show that the free-energy landscape for the protonation-deprotonation reaction of the cysteine residue of GSH computed using metadynamics sampling provides accurate estimates of the pKa and correctly predicts the shift in the dissociation constant values as compared with the isolated cysteine amino acid.

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Year:  2015        PMID: 26550841     DOI: 10.1021/acs.jpcb.5b10093

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

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Journal:  Chem Sci       Date:  2022-06-08       Impact factor: 9.969

2.  Ab Initio Molecular Dynamics Simulations of the Influence of Lithium Bromide Salt on the Deprotonation of Formic Acid in Aqueous Solution.

Authors:  Christopher D Daub; Lauri Halonen
Journal:  J Phys Chem B       Date:  2019-07-30       Impact factor: 2.991

3.  Controlled Growth of CdS Nanostep Structured Arrays to Improve Photoelectrochemical Performance.

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Journal:  Front Chem       Date:  2020-12-10       Impact factor: 5.221

Review 4.  Advanced Theory and Simulation to Guide the Development of CO2 Capture Solvents.

Authors:  Loukas Kollias; Difan Zhang; Sarah I Allec; Manh-Thuong Nguyen; Mal-Soon Lee; David C Cantu; Roger Rousseau; Vassiliki-Alexandra Glezakou
Journal:  ACS Omega       Date:  2022-04-04

5.  Identification of pyrogallol as a warhead in design of covalent inhibitors for the SARS-CoV-2 3CL protease.

Authors:  Haixia Su; Sheng Yao; Wenfeng Zhao; Yumin Zhang; Jia Liu; Qiang Shao; Qingxing Wang; Minjun Li; Hang Xie; Weijuan Shang; Changqiang Ke; Lu Feng; Xiangrui Jiang; Jingshan Shen; Gengfu Xiao; Hualiang Jiang; Leike Zhang; Yang Ye; Yechun Xu
Journal:  Nat Commun       Date:  2021-06-15       Impact factor: 14.919

  5 in total

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