Literature DB >> 26545740

Complete genome sequences and analysis of the Fusobacterium nucleatum subspecies animalis 7-1 bacteriophage ɸFunu1 and ɸFunu2.

Kyla Cochrane1, Abigail Manson McGuire2, Margaret E Priest2, Amr Abouelleil2, Gustavo C Cerqueira2, Reggie Lo1, Ashlee M Earl2, Emma Allen-Vercoe1.   

Abstract

Fusobacterium nucleatum is a strictly anaerobic, Gram negative bacterial species that has been associated with dental infections, pre-term labor, appendicitis, inflammatory bowel disease, and, more recently, colorectal cancer. The species is unusual in its phenotypic and genotypic heterogeneity, with some strains demonstrating a more virulent phenotype than others; however, as yet the genetic basis for these differences is not understood. Bacteriophage are known to contribute to the virulence phenotype of several bacterial species. In this work, we set out to characterize the bacteriophage associated with F. nucleatum subsp. animalis strain 7-1, a highly invasive isolate from the human gastrointestinal tract. As well, we used computational approaches to predict and compare bacteriophage signatures across available sequenced F. nucleatum genomes. Crown
Copyright © 2015. Published by Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26545740      PMCID: PMC4775352          DOI: 10.1016/j.anaerobe.2015.10.013

Source DB:  PubMed          Journal:  Anaerobe        ISSN: 1075-9964            Impact factor:   3.331


  30 in total

1.  SignalP 4.0: discriminating signal peptides from transmembrane regions.

Authors:  Thomas Nordahl Petersen; Søren Brunak; Gunnar von Heijne; Henrik Nielsen
Journal:  Nat Methods       Date:  2011-09-29       Impact factor: 28.547

2.  Isolation of a novel bacteriophage specific for the periodontal pathogen Fusobacterium nucleatum.

Authors:  Pamela Machuca; Leslie Daille; Enrique Vinés; Liliana Berrocal; Mauricio Bittner
Journal:  Appl Environ Microbiol       Date:  2010-09-17       Impact factor: 4.792

3.  Invasive potential of gut mucosa-derived Fusobacterium nucleatum positively correlates with IBD status of the host.

Authors:  Jaclyn Strauss; Gilaad G Kaplan; Paul L Beck; Kevin Rioux; Remo Panaccione; Rebekah Devinney; Tarah Lynch; Emma Allen-Vercoe
Journal:  Inflamm Bowel Dis       Date:  2011-01-13       Impact factor: 5.325

4.  Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma.

Authors:  Mauro Castellarin; René L Warren; J Douglas Freeman; Lisa Dreolini; Martin Krzywinski; Jaclyn Strauss; Rebecca Barnes; Peter Watson; Emma Allen-Vercoe; Richard A Moore; Robert A Holt
Journal:  Genome Res       Date:  2011-10-18       Impact factor: 9.043

5.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

6.  Phenotypic and genotypic analyses of clinical Fusobacterium nucleatum and Fusobacterium periodonticum isolates from the human gut.

Authors:  Jaclyn Strauss; Aaron White; Christian Ambrose; Julie McDonald; Emma Allen-Vercoe
Journal:  Anaerobe       Date:  2008-12-16       Impact factor: 3.331

7.  A Shigella boydii bacteriophage which resembles Salmonella phage ViI.

Authors:  Hany Anany; Erika J Lingohr; Andre Villegas; Hans-Wolfgang Ackermann; Yi-Min She; Mansel W Griffiths; Andrew M Kropinski
Journal:  Virol J       Date:  2011-05-19       Impact factor: 4.099

8.  PHAST: a fast phage search tool.

Authors:  You Zhou; Yongjie Liang; Karlene H Lynch; Jonathan J Dennis; David S Wishart
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The Pfam protein families database.

Authors:  Robert D Finn; John Tate; Jaina Mistry; Penny C Coggill; Stephen John Sammut; Hans-Rudolf Hotz; Goran Ceric; Kristoffer Forslund; Sean R Eddy; Erik L L Sonnhammer; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2007-11-26       Impact factor: 16.971

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  3 in total

1.  RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum.

Authors:  Falk Ponath; Caroline Tawk; Yan Zhu; Lars Barquist; Franziska Faber; Jörg Vogel
Journal:  Nat Microbiol       Date:  2021-07-08       Impact factor: 17.745

2.  Genomic, morphological and functional characterisation of novel bacteriophage FNU1 capable of disrupting Fusobacterium nucleatum biofilms.

Authors:  Mwila Kabwe; Teagan L Brown; Stuart Dashper; Lachlan Speirs; Heng Ku; Steve Petrovski; Hiu Tat Chan; Peter Lock; Joseph Tucci
Journal:  Sci Rep       Date:  2019-06-24       Impact factor: 4.379

3.  Exploring Codon Adjustment Strategies towards Escherichia coli-Based Production of Viral Proteins Encoded by HTH1, a Novel Prophage of the Marine Bacterium Hypnocyclicus thermotrophus.

Authors:  Hasan Arsın; Andrius Jasilionis; Håkon Dahle; Ruth-Anne Sandaa; Runar Stokke; Eva Nordberg Karlsson; Ida Helene Steen
Journal:  Viruses       Date:  2021-06-23       Impact factor: 5.048

  3 in total

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