Literature DB >> 26545162

Experiments on and Numerical Modeling of the Capture and Concentration of Transcription-Translation Machinery inside Vesicles.

Fabio Mavelli1, Pasquale Stano2.   

Abstract

Synthetic or semi-synthetic minimal cells are those cell-like artificial compartments that are based on the encapsulation of molecules inside lipid vesicles (liposomes). Synthetic cells are currently used as primitive cell models and are very promising tools for future biotechnology. Despite the recent experimental advancements and sophistication reached in this field, the complete elucidation of many fundamental physical aspects still poses experimental and theoretical challenges. The interplay between solute capture and vesicle formation is one of the most intriguing ones. In a series of studies, we have reported that when vesicles spontaneously form in a dilute solution of proteins, ribosomes, or ribo-peptidic complexes, then, contrary to statistical predictions, it is possible to find a small fraction of liposomes (<1%) that contain a very large number of solutes, so that their local (intravesicular) concentrations largely exceed the expected value. More recently, we have demonstrated that this effect (spontaneous crowding) operates also on multimolecular mixtures, and can drive the synthesis of proteins inside vesicles, whereas the same reaction does not proceed at a measurable rate in the external bulk phase. Here we firstly introduce and discuss these already published observations. Then, we present a computational investigation of the encapsulation of transcription-translation (TX-TL) machinery inside vesicles, based on a minimal protein synthesis model and on different solute partition functions. Results show that experimental data are compatible with an entrapment model that follows a power law rather than a Gaussian distribution. The results are discussed from the viewpoint of origin of life, highlighting open questions and possible future research directions.

Entities:  

Keywords:  Cell-free transcription-translation (TX-TL); liposomes; power law; stochastic encapsulation; synthetic biology; synthetic cells

Year:  2015        PMID: 26545162     DOI: 10.1162/ARTL_a_00187

Source DB:  PubMed          Journal:  Artif Life        ISSN: 1064-5462            Impact factor:   0.667


  4 in total

Review 1.  Enzymatic reactions in confined environments.

Authors:  Andreas Küchler; Makoto Yoshimoto; Sandra Luginbühl; Fabio Mavelli; Peter Walde
Journal:  Nat Nanotechnol       Date:  2016-05-05       Impact factor: 39.213

2.  A MATLAB toolbox for modeling genetic circuits in cell-free systems.

Authors:  Vipul Singhal; Zoltan A Tuza; Zachary Z Sun; Richard M Murray
Journal:  Synth Biol (Oxf)       Date:  2021-02-05

3.  Chromatophores efficiently promote light-driven ATP synthesis and DNA transcription inside hybrid multicompartment artificial cells.

Authors:  Emiliano Altamura; Paola Albanese; Roberto Marotta; Francesco Milano; Michele Fiore; Massimo Trotta; Pasquale Stano; Fabio Mavelli
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-16       Impact factor: 12.779

4.  Novel directions in molecular systems design: The case of light-transducing synthetic cells.

Authors:  Pasquale Stano; Emiliano Altamura; Fabio Mavelli
Journal:  Commun Integr Biol       Date:  2017-11-03
  4 in total

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