Literature DB >> 26539105

Neural field simulator: two-dimensional spatio-temporal dynamics involving finite transmission speed.

Eric J Nichols1, Axel Hutt1.   

Abstract

Neural Field models (NFM) play an important role in the understanding of neural population dynamics on a mesoscopic spatial and temporal scale. Their numerical simulation is an essential element in the analysis of their spatio-temporal dynamics. The simulation tool described in this work considers scalar spatially homogeneous neural fields taking into account a finite axonal transmission speed and synaptic temporal derivatives of first and second order. A text-based interface offers complete control of field parameters and several approaches are used to accelerate simulations. A graphical output utilizes video hardware acceleration to display running output with reduced computational hindrance compared to simulators that are exclusively software-based. Diverse applications of the tool demonstrate breather oscillations, static and dynamic Turing patterns and activity spreading with finite propagation speed. The simulator is open source to allow tailoring of code and this is presented with an extension use case.

Entities:  

Keywords:  delay; neural field; numerical simulation; pattern formation

Year:  2015        PMID: 26539105      PMCID: PMC4611063          DOI: 10.3389/fninf.2015.00025

Source DB:  PubMed          Journal:  Front Neuroinform        ISSN: 1662-5196            Impact factor:   4.081


  33 in total

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Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-01-22

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Authors:  Axel Hutt; Nicolas Rougier
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-11-12

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Journal:  Neuroimage       Date:  2011-09-05       Impact factor: 6.556

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Authors:  Romain Veltz; Olivier Faugeras
Journal:  J Math Neurosci       Date:  2011-05-03       Impact factor: 1.300

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  3 in total

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Authors:  Tiago F Sequeira; Pedro M Lima
Journal:  J Comput Neurosci       Date:  2022-05-27       Impact factor: 1.453

2.  Integration of Continuous-Time Dynamics in a Spiking Neural Network Simulator.

Authors:  Jan Hahne; David Dahmen; Jannis Schuecker; Andreas Frommer; Matthias Bolten; Moritz Helias; Markus Diesmann
Journal:  Front Neuroinform       Date:  2017-05-24       Impact factor: 4.081

3.  NFTsim: Theory and Simulation of Multiscale Neural Field Dynamics.

Authors:  Paula Sanz-Leon; Peter A Robinson; Stuart A Knock; Peter M Drysdale; Romesh G Abeysuriya; Felix K Fung; Chris J Rennie; Xuelong Zhao
Journal:  PLoS Comput Biol       Date:  2018-08-22       Impact factor: 4.475

  3 in total

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