Literature DB >> 26537399

Electron flow through biological molecules: does hole hopping protect proteins from oxidative damage?

Jay R Winkler1, Harry B Gray1.   

Abstract

Biological electron transfers often occur between metal-containing cofactors that are separated by very large molecular distances. Employing photosensitizer-modified iron and copper proteins, we have shown that single-step electron tunneling can occur on nanosecond to microsecond timescales at distances between 15 and 20 Å. We also have shown that charge transport can occur over even longer distances by hole hopping (multistep tunneling) through intervening tyrosines and tryptophans. In this perspective, we advance the hypothesis that such hole hopping through Tyr/Trp chains could protect oxygenase, dioxygenase, and peroxidase enzymes from oxidative damage. In support of this view, by examining the structures of P450 (CYP102A) and 2OG-Fe (TauD) enzymes, we have identified candidate Tyr/Trp chains that could transfer holes from uncoupled high-potential intermediates to reductants in contact with protein surface sites.

Entities:  

Keywords:  azurin; cytochrome P450; electron transfer; hole hopping; protein radical

Mesh:

Substances:

Year:  2015        PMID: 26537399      PMCID: PMC4793975          DOI: 10.1017/S0033583515000062

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  81 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-05       Impact factor: 11.205

2.  Intraprotein radical transfer during photoactivation of DNA photolyase.

Authors:  C Aubert; M H Vos; P Mathis; A P Eker; K Brettel
Journal:  Nature       Date:  2000-06-01       Impact factor: 49.962

3.  Electron hopping through proteins.

Authors:  Jeffrey J Warren; Maraia E Ener; Antonín Vlček; Jay R Winkler; Harry B Gray
Journal:  Coord Chem Rev       Date:  2012-04-05       Impact factor: 22.315

4.  Peroxidase activity stabilization of cytochrome P450(BM3) by rational analysis of intramolecular electron transfer.

Authors:  Abraham Vidal-Limón; Sergio Águila; Marcela Ayala; Cesar V Batista; Rafael Vazquez-Duhalt
Journal:  J Inorg Biochem       Date:  2013-01-26       Impact factor: 4.155

5.  Production of reactive oxygen species by microsomes enriched in specific human cytochrome P450 enzymes.

Authors:  S Puntarulo; A I Cederbaum
Journal:  Free Radic Biol Med       Date:  1998-05       Impact factor: 7.376

6.  Redox control and hydrogen bonding networks: proton-coupled electron transfer reactions and tyrosine Z in the photosynthetic oxygen-evolving complex.

Authors:  James M Keough; Ashley N Zuniga; David L Jenson; Bridgette A Barry
Journal:  J Phys Chem B       Date:  2013-01-24       Impact factor: 2.991

7.  Intraprotein electron transfer between tyrosine and tryptophan in DNA photolyase from Anacystis nidulans.

Authors:  C Aubert; P Mathis; A P Eker; K Brettel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-11       Impact factor: 11.205

8.  The role of tryptophan 97 of cytochrome P450 BM3 from Bacillus megaterium in catalytic function. Evidence against the 'covalent switching' hypothesis of P-450 electron transfer.

Authors:  A W Munro; K Malarkey; J McKnight; A J Thomson; S M Kelly; N C Price; J G Lindsay; J R Coggins; J S Miles
Journal:  Biochem J       Date:  1994-10-15       Impact factor: 3.857

Review 9.  Flavocytochrome P450 BM3: an update on structure and mechanism of a biotechnologically important enzyme.

Authors:  A J Warman; O Roitel; R Neeli; H M Girvan; H E Seward; S A Murray; K J McLean; M G Joyce; H Toogood; R A Holt; D Leys; N S Scrutton; A W Munro
Journal:  Biochem Soc Trans       Date:  2005-08       Impact factor: 5.407

10.  Structural and spectroscopic characterization of P450 BM3 mutants with unprecedented P450 heme iron ligand sets. New heme ligation states influence conformational equilibria in P450 BM3.

Authors:  Hazel M Girvan; Harriet E Seward; Helen S Toogood; Myles R Cheesman; David Leys; Andrew W Munro
Journal:  J Biol Chem       Date:  2006-10-31       Impact factor: 5.157

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  25 in total

1.  Charge Transfer between [4Fe4S] Proteins and DNA Is Unidirectional: Implications for Biomolecular Signaling.

Authors:  Ruijie D Teo; Benjamin J G Rousseau; Elizabeth R Smithwick; Rosa Di Felice; David N Beratan; Agostino Migliore
Journal:  Chem       Date:  2018-10-25       Impact factor: 22.804

2.  Hole Hopping Across a Protein-Protein Interface.

Authors:  Kana Takematsu; Petr Pospíšil; Martin Pižl; Michael Towrie; Jan Heyda; Stanislav Záliš; Jens T Kaiser; Jay R Winkler; Harry B Gray; Antonín Vlček
Journal:  J Phys Chem B       Date:  2019-02-06       Impact factor: 2.991

3.  Real-space analysis of radiation-induced specific changes with independent component analysis.

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4.  Ultrafast Charge-Transfer Dynamics in the Iron-Sulfur Complex of Rhodobacter capsulatus Ferredoxin VI.

Authors:  Ziliang Mao; Elizabeth C Carroll; Peter W Kim; Stephen P Cramer; Delmar S Larsen
Journal:  J Phys Chem Lett       Date:  2017-09-07       Impact factor: 6.475

5.  Mapping hole hopping escape routes in proteins.

Authors:  Ruijie D Teo; Ruobing Wang; Elizabeth R Smithwick; Agostino Migliore; Michael J Therien; David N Beratan
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-24       Impact factor: 11.205

Review 6.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

7.  Photoinduced hole hopping through tryptophans in proteins.

Authors:  Stanislav Záliš; Jan Heyda; Filip Šebesta; Jay R Winkler; Harry B Gray; Antonín Vlček
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-16       Impact factor: 11.205

8.  Driving Protein Conformational Changes with Light: Photoinduced Structural Rearrangement in a Heterobimetallic Oxidase.

Authors:  Pearson T Maugeri; Julia J Griese; Rui M Branca; Effie K Miller; Zachary R Smith; Jürgen Eirich; Martin Högbom; Hannah S Shafaat
Journal:  J Am Chem Soc       Date:  2018-01-22       Impact factor: 15.419

Review 9.  Ru(II)-diimine complexes and cytochrome P450 working hand-in-hand.

Authors:  Celine Eidenschenk; Lionel Cheruzel
Journal:  J Inorg Biochem       Date:  2020-09-12       Impact factor: 4.155

10.  Structure of a Ferryl Mimic in the Archetypal Iron(II)- and 2-(Oxo)-glutarate-Dependent Dioxygenase, TauD.

Authors:  Katherine M Davis; Madison Altmyer; Ryan J Martinie; Irene Schaperdoth; Carsten Krebs; J Martin Bollinger; Amie K Boal
Journal:  Biochemistry       Date:  2019-10-02       Impact factor: 3.162

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