Literature DB >> 26537398

The nature of chemical innovation: new enzymes by evolution.

Frances H Arnold1.   

Abstract

I describe how we direct the evolution of non-natural enzyme activities, using chemical intuition and information on structure and mechanism to guide us to the most promising reaction/enzyme systems. With synthetic reagents to generate new reactive intermediates and just a few amino acid substitutions to tune the active site, a cytochrome P450 can catalyze a variety of carbene and nitrene transfer reactions. The cyclopropanation, N-H insertion, C-H amination, sulfimidation, and aziridination reactions now demonstrated are all well known in chemical catalysis but have no counterparts in nature. The new enzymes are fully genetically encoded, assemble and function inside of cells, and can be optimized for different substrates, activities, and selectivities. We are learning how to use nature's innovation mechanisms to marry some of the synthetic chemists' favorite transformations with the exquisite selectivity and tunability of enzymes.

Entities:  

Keywords:  biocatalysis; cytochrome P450; directed evolution; non-natural enzymes

Mesh:

Substances:

Year:  2015        PMID: 26537398     DOI: 10.1017/S003358351500013X

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  27 in total

1.  Recombinant silicateins as model biocatalysts in organosiloxane chemistry.

Authors:  S Yasin Tabatabaei Dakhili; Stephanie A Caslin; Abayomi S Faponle; Peter Quayle; Sam P de Visser; Lu Shin Wong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

Review 2.  Exploiting and engineering hemoproteins for abiological carbene and nitrene transfer reactions.

Authors:  Oliver F Brandenberg; Rudi Fasan; Frances H Arnold
Journal:  Curr Opin Biotechnol       Date:  2017-07-13       Impact factor: 9.740

3.  Biocatalysis in the Pharmaceutical Industry: The Need for Speed.

Authors:  Matthew D Truppo
Journal:  ACS Med Chem Lett       Date:  2017-04-18       Impact factor: 4.345

4.  The Sustained Impact of Model Organisms-in Genetics and Epigenetics.

Authors:  Nancy M Bonini; Shelley L Berger
Journal:  Genetics       Date:  2017-01       Impact factor: 4.562

Review 5.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

6.  Funneled energy landscape unifies principles of protein binding and evolution.

Authors:  Zhiqiang Yan; Jin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-16       Impact factor: 11.205

7.  Some Surprising Implications of NMR-directed Simulations of Substrate Recognition and Binding by Cytochrome P450cam (CYP101A1).

Authors:  Eliana K Asciutto; Thomas C Pochapsky
Journal:  J Mol Biol       Date:  2018-03-27       Impact factor: 5.469

8.  Mutating a Highly Conserved Residue in Diverse Cytochrome P450s Facilitates Diastereoselective Olefin Cyclopropanation.

Authors:  Joshua G Gober; Amy E Rydeen; Evan J Gibson-O'Grady; Janelle B Leuthaeuser; Jacquelyn S Fetrow; Eric M Brustad
Journal:  Chembiochem       Date:  2016-02-04       Impact factor: 3.164

9.  The Amaryllidaceae alkaloids: biosynthesis and methods for enzyme discovery.

Authors:  Matthew B Kilgore; Toni M Kutchan
Journal:  Phytochem Rev       Date:  2015-12-17       Impact factor: 5.374

Review 10.  How Do Cells Adapt? Stories Told in Landscapes.

Authors:  Luca Agozzino; Gábor Balázsi; Jin Wang; Ken A Dill
Journal:  Annu Rev Chem Biomol Eng       Date:  2020-06-07       Impact factor: 11.059

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