Literature DB >> 26529781

Dynamical Robustness against Multiple Mutations in Signaling Networks.

Yung-Keun Kwon, Junil Kim, Kwang-Hyun Cho.   

Abstract

It has been known that the robust behavior of a cellular signaling network is strongly related to the structural characteristics of the network, such as connectivity, the number of feedback loops, and the number of feed-forward loops. Previous studies proved such relationships through dynamical simulations of various random network models. Most of them, however, focused on robustness against a single node mutation. Considering that complex diseases such as cancer are mostly caused by simultaneous dysfunction of multiple genes, it is needed to investigate the robustness of a network against multiple node mutations. In this paper, we investigated the robustness of a network against multiple node mutations through extensive simulations on the basis of Boolean network models. We found that the robustness against multiple mutations is, in most cases, weaker than the robustness against a single node mutation on average. Moreover, we found that the robustness against multiple mutations is strongly positively correlated with the robustness against single mutation. The difference between the multiple- and single-mutation robustness became larger as the number of mutated nodes increased or the number of nodes that are robust to single-mutation decreased. We further found that a node of relatively large connectivity or being involved with many feedback loops tends to be non-robust against multiple mutations. This finding is supported by the observation that poly-genic disease genes have high connectivity and are involved with a large number of feedback loops than mono-genic disease genes in a human signaling network. Together, our study shows that previous studies for a single node mutation can be extended to understand the network dynamics for multiple node mutations.

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Year:  2015        PMID: 26529781     DOI: 10.1109/TCBB.2015.2495251

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  6 in total

1.  MORO: a Cytoscape app for relationship analysis between modularity and robustness in large-scale biological networks.

Authors:  Cong-Doan Truong; Tien-Dzung Tran; Yung-Keun Kwon
Journal:  BMC Syst Biol       Date:  2016-12-23

2.  RMut: R package for a Boolean sensitivity analysis against various types of mutations.

Authors:  Hung-Cuong Trinh; Yung-Keun Kwon
Journal:  PLoS One       Date:  2019-03-19       Impact factor: 3.240

Review 3.  Boolean modelling as a logic-based dynamic approach in systems medicine.

Authors:  Ahmed Abdelmonem Hemedan; Anna Niarakis; Reinhard Schneider; Marek Ostaszewski
Journal:  Comput Struct Biotechnol J       Date:  2022-06-17       Impact factor: 6.155

4.  Construction and analysis of gene-gene dynamics influence networks based on a Boolean model.

Authors:  Maulida Mazaya; Hung-Cuong Trinh; Yung-Keun Kwon
Journal:  BMC Syst Biol       Date:  2017-12-21

5.  In Silico Pleiotropy Analysis in KEGG Signaling Networks Using a Boolean Network Model.

Authors:  Maulida Mazaya; Yung-Keun Kwon
Journal:  Biomolecules       Date:  2022-08-18

6.  Automatic Screening for Perturbations in Boolean Networks.

Authors:  Julian D Schwab; Hans A Kestler
Journal:  Front Physiol       Date:  2018-04-24       Impact factor: 4.566

  6 in total

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