Literature DB >> 26528558

The CellML Metadata Framework 2.0 Specification.

Michael T Cooling, Peter Hunter.   

Abstract

The CellML Metadata Framework 2.0 is a modular framework that describes how semantic annotations should be made about mathematical models encoded in the CellML (www.cellml.org) format, and their elements. In addition to the Core specification, there are several satellite specifications, each designed to cater for model annotation in a different context. Basic Model Information, Citation, License and Biological Annotation specifications are presented.

Mesh：

Year:  2015        PMID： 26528558     DOI： 10.2390/biecoll-jib-2015-260

Source DB:  PubMed          Journal:  J Integr Bioinform        ISSN： 1613-4516


  7 in total

1.  Modular modelling with Physiome standards.

Authors:  Michael T Cooling; David P Nickerson; Poul M F Nielsen; Peter J Hunter
Journal:  J Physiol       Date:  2016-08-29       Impact factor: 5.182

2.  Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.

Authors:  Falk Schreiber; Gary D Bader; Padraig Gleeson; Martin Golebiewski; Michael Hucka; Nicolas Le Novère; Chris Myers; David Nickerson; Björn Sommer; Dagmar Walthemath
Journal:  J Integr Bioinform       Date:  2016-12-18

Review 3.  Next-generation, personalised, model-based critical care medicine: a state-of-the art review of in silico virtual patient models, methods, and cohorts, and how to validation them.

Authors:  J Geoffrey Chase; Jean-Charles Preiser; Jennifer L Dickson; Antoine Pironet; Yeong Shiong Chiew; Christopher G Pretty; Geoffrey M Shaw; Balazs Benyo; Knut Moeller; Soroush Safaei; Merryn Tawhai; Peter Hunter; Thomas Desaive
Journal:  Biomed Eng Online       Date:  2018-02-20       Impact factor: 2.819

Review 4.  Harmonizing semantic annotations for computational models in biology.

Authors:  Maxwell Lewis Neal; Matthias König; David Nickerson; Göksel Mısırlı; Reza Kalbasi; Andreas Dräger; Koray Atalag; Vijayalakshmi Chelliah; Michael T Cooling; Daniel L Cook; Sharon Crook; Miguel de Alba; Samuel H Friedman; Alan Garny; John H Gennari; Padraig Gleeson; Martin Golebiewski; Michael Hucka; Nick Juty; Chris Myers; Brett G Olivier; Herbert M Sauro; Martin Scharm; Jacky L Snoep; Vasundra Touré; Anil Wipat; Olaf Wolkenhauer; Dagmar Waltemath
Journal:  Brief Bioinform       Date:  2019-03-22       Impact factor: 11.622

Review 5.  Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.

Authors:  Falk Schreiber; Björn Sommer; Gary D Bader; Padraig Gleeson; Martin Golebiewski; Michael Hucka; Sarah M Keating; Matthias König; Chris Myers; David Nickerson; Dagmar Waltemath
Journal:  J Integr Bioinform       Date:  2019-07-13

6.  Model annotation and discovery with the Physiome Model Repository.

Authors:  Dewan M Sarwar; Reza Kalbasi; John H Gennari; Brian E Carlson; Maxwell L Neal; Bernard de Bono; Koray Atalag; Peter J Hunter; David P Nickerson
Journal:  BMC Bioinformatics       Date:  2019-09-06       Impact factor: 3.169

7.  Specifications of standards in systems and synthetic biology: status and developments in 2021.

Authors:  Falk Schreiber; Padraig Gleeson; Martin Golebiewski; Thomas E Gorochowski; Michael Hucka; Sarah M Keating; Matthias König; Chris J Myers; David P Nickerson; Björn Sommer; Dagmar Waltemath
Journal:  J Integr Bioinform       Date:  2021-10-22
  7 in total

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