Literature DB >> 26528557

The CellML 1.1 Specification.

Autumn Cuellar, Warren Hedley, Melanie Nelson, Catherine Lloyd, Matt Halstead, David Bullivant, David Nickerson, Peter Hunter, Poul Nielsen.   

Abstract

This document specifies CellML 1.1, an XML-based language for describing and exchanging models of cellular and subcellular processes. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equations manipulating those variables. Models may import other models to create systems of increasing complexity. Metadata may be embedded in CellML documents using RDF.

Mesh：

Year:  2015        PMID： 26528557     DOI： 10.2390/biecoll-jib-2015-259

Source DB:  PubMed          Journal:  J Integr Bioinform        ISSN： 1613-4516


  8 in total

1.  BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks.

Authors:  Paul F Lang; Yassmine Chebaro; Xiaoyue Zheng; John A P Sekar; Bilal Shaikh; Darren A Natale; Jonathan R Karr
Journal:  Genome Biol       Date:  2020-05-18       Impact factor: 13.583

2.  COMODI: an ontology to characterise differences in versions of computational models in biology.

Authors:  Martin Scharm; Dagmar Waltemath; Pedro Mendes; Olaf Wolkenhauer
Journal:  J Biomed Semantics       Date:  2016-07-11

3.  Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.

Authors:  Falk Schreiber; Gary D Bader; Padraig Gleeson; Martin Golebiewski; Michael Hucka; Nicolas Le Novère; Chris Myers; David Nickerson; Björn Sommer; Dagmar Walthemath
Journal:  J Integr Bioinform       Date:  2016-12-18

4.  DENIS: Solving cardiac electrophysiological simulations with volunteer computing.

Authors:  Violeta Monasterio; Joel Castro-Mur; Jesús Carro
Journal:  PLoS One       Date:  2018-10-16       Impact factor: 3.240

Review 5.  Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.

Authors:  Falk Schreiber; Björn Sommer; Gary D Bader; Padraig Gleeson; Martin Golebiewski; Michael Hucka; Sarah M Keating; Matthias König; Chris Myers; David Nickerson; Dagmar Waltemath
Journal:  J Integr Bioinform       Date:  2019-07-13

6.  Specifications of standards in systems and synthetic biology: status and developments in 2021.

Authors:  Falk Schreiber; Padraig Gleeson; Martin Golebiewski; Thomas E Gorochowski; Michael Hucka; Sarah M Keating; Matthias König; Chris J Myers; David P Nickerson; Björn Sommer; Dagmar Waltemath
Journal:  J Integr Bioinform       Date:  2021-10-22

7.  Exploring the evolution of biochemical models at the network level.

Authors:  Tom Gebhardt; Vasundra Touré; Dagmar Waltemath; Olaf Wolkenhauer; Martin Scharm
Journal:  PLoS One       Date:  2022-03-21       Impact factor: 3.240

Review 8.  Computational models in cardiology.

Authors:  Steven A Niederer; Joost Lumens; Natalia A Trayanova
Journal:  Nat Rev Cardiol       Date:  2019-02       Impact factor: 32.419
  8 in total

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