Literature DB >> 26527841

Marine Nematode Taxonomy in Africa: Promising Prospects Against Scarcity of Information.

Fehmi Boufahja1, Federica Semprucci2, Hamouda Beyrem1, Punyasloke Bhadury3.   

Abstract

From the late 19th century, Africa has faced heavy exploitation of its natural resources with increasing land/water pollution, and several described species have already become extinct or close to extinction. This could also be the case for marine nematodes, which are the most abundant and diverse benthic group in marine sediments, and play major roles in ecosystem functioning. Compared to Europe and North America, only a handful of investigations on marine nematodes have been conducted to date in Africa. This is due to the scarcity of experienced taxonomists, absence of identification guides, as well as local appropriate infrastructures. A pivotal project has started recently between nematologists from Africa (Tunisia), India, and Europe (Italy) to promote taxonomic study and biodiversity estimation of marine nematodes in the African continent. To do this, as a first step, collection of permanent slides of marine nematodes (235 nominal species and 14 new to science but not yet described) was recently established at the Faculty of Sciences of Bizerte (Tunisia). Capacity building of next generation of African taxonomists have been carried out at level of both traditional and molecular taxonomy (DNA barcoding and next-generation sequencing [NGS]), but they need to be implemented. Indeed, the integration of these two approaches appears crucial to overcome lack of information on the taxonomy, ecology, and biodiversity of marine nematodes from African coastal waters.

Keywords:  Africa; barcoding; biodiversity; integrative taxonomy; molecular tools; morphology; next-generation sequencing

Year:  2015        PMID: 26527841      PMCID: PMC4612190     

Source DB:  PubMed          Journal:  J Nematol        ISSN: 0022-300X            Impact factor:   1.402


  39 in total

1.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

2.  The promise of DNA barcoding for taxonomy.

Authors:  Paul D N Hebert; T Ryan Gregory
Journal:  Syst Biol       Date:  2005-10       Impact factor: 15.683

3.  An integrated approach to fast and informative morphological vouchering of nematodes for applications in molecular barcoding.

Authors:  Paul De Ley; Irma Tandingan De Ley; Krystalynne Morris; Eyualem Abebe; Manuel Mundo-Ocampo; Melissa Yoder; Joseph Heras; Dora Waumann; Axayácatl Rocha-Olivares; A H Jay Burr; James G Baldwin; W Kelley Thomas
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-10-29       Impact factor: 6.237

4.  Effects of increasing levels of nickel contamination on structure of offshore nematode communities in experimental microcosms.

Authors:  A Hedfi; E Mahmoudi; F Boufahja; H Beyrem; P Aïssa
Journal:  Bull Environ Contam Toxicol       Date:  2007-08-22       Impact factor: 2.151

5.  An observational study on changes in biometry and generation time of Odontophora villoti (Nematoda, Axonolaimidae) related to petroleum pollution in Bizerte bay, Tunisia.

Authors:  Fehmi Boufahja; Amor Hedfi; Naceur Essid; Patricia Aïssa; Ezzeddine Mahmoudi; Hamouda Beyrem
Journal:  Environ Sci Pollut Res Int       Date:  2011-09-10       Impact factor: 4.223

6.  Seasonal dynamics of population genetic structure in cryptic taxa of the Pellioditis marina complex (Nematoda: Rhabditida).

Authors:  S Derycke; T Backeljau; C Vlaeminck; A Vierstraete; J Vanfleteren; M Vincx; T Moens
Journal:  Genetica       Date:  2006 Sep-Nov       Impact factor: 1.082

7.  Effects of two lubricant oils on marine nematode assemblages in a laboratory microcosm experiment.

Authors:  H Beyrem; H Louati; N Essid; P Aïssa; E Mahmoudi
Journal:  Mar Environ Res       Date:  2009-11-10       Impact factor: 3.130

8.  Moving towards a complete molecular framework of the Nematoda: a focus on the Enoplida and early-branching clades.

Authors:  Holly M Bik; P John D Lambshead; W Kelley Thomas; David H Lunt
Journal:  BMC Evol Biol       Date:  2010-11-12       Impact factor: 3.260

9.  Exploring the use of cytochrome oxidase c subunit 1 (COI) for DNA barcoding of free-living marine nematodes.

Authors:  Sofie Derycke; Jan Vanaverbeke; Annelien Rigaux; Thierry Backeljau; Tom Moens
Journal:  PLoS One       Date:  2010-10-28       Impact factor: 3.240

10.  Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

Authors:  Arlin Stoltzfus; Hilmar Lapp; Naim Matasci; Helena Deus; Brian Sidlauskas; Christian M Zmasek; Gaurav Vaidya; Enrico Pontelli; Karen Cranston; Rutger Vos; Campbell O Webb; Luke J Harmon; Megan Pirrung; Brian O'Meara; Matthew W Pennell; Siavash Mirarab; Michael S Rosenberg; James P Balhoff; Holly M Bik; Tracy A Heath; Peter E Midford; Joseph W Brown; Emily Jane McTavish; Jeet Sukumaran; Mark Westneat; Michael E Alfaro; Aaron Steele; Greg Jordan
Journal:  BMC Bioinformatics       Date:  2013-05-13       Impact factor: 3.169

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  3 in total

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Authors:  Naceur Essid; Mohamed Allouche; Mounira Lazzem; Abdel Halim Harrath; Lamjed Mansour; Saleh Alwasel; Ezzeddine Mahmoudi; Hamouda Beyrem; Fehmi Boufahja
Journal:  Mar Pollut Bull       Date:  2020-06-11       Impact factor: 5.553

2.  The Global Museum: natural history collections and the future of evolutionary science and public education.

Authors:  Freek T Bakker; Alexandre Antonelli; Julia A Clarke; Joseph A Cook; Scott V Edwards; Per G P Ericson; Søren Faurby; Nuno Ferrand; Magnus Gelang; Rosemary G Gillespie; Martin Irestedt; Kennet Lundin; Ellen Larsson; Pável Matos-Maraví; Johannes Müller; Ted von Proschwitz; George K Roderick; Alexander Schliep; Niklas Wahlberg; John Wiedenhoeft; Mari Källersjö
Journal:  PeerJ       Date:  2020-01-28       Impact factor: 2.984

3.  The identification of sympatric cryptic free-living nematode species in the Antarctic intertidal.

Authors:  Matthew R Lee; Cristian B Canales-Aguirre; Daniela Nuñez; Karla Pérez; Crisitan E Hernández; Antonio Brante
Journal:  PLoS One       Date:  2017-10-05       Impact factor: 3.240

  3 in total

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