Literature DB >> 26527577

Harnessing natural product assembly lines: structure, promiscuity, and engineering.

Christopher C Ladner1, Gavin J Williams2.   

Abstract

Many therapeutically relevant natural products are biosynthesized by the action of giant mega-enzyme assembly lines. By leveraging the specificity, promiscuity, and modularity of assembly lines, a variety of strategies has been developed that enables the biosynthesis of modified natural products. This review briefly summarizes recent structural advances related to natural product assembly lines, discusses chemical approaches to probing assembly line structures in the absence of traditional biophysical data, and surveys efforts that harness the inherent or engineered promiscuity of assembly lines for the synthesis of non-natural polyketides and non-ribosomal peptide analogues.

Entities:  

Keywords:  Combinatorial biosynthesis; Enzyme engineering; Non-ribosomal peptide synthases; Polyketide synthases; Synthetic biology

Mesh:

Substances:

Year:  2015        PMID: 26527577      PMCID: PMC4753117          DOI: 10.1007/s10295-015-1704-8

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  155 in total

1.  Structure-based dissociation of a type I polyketide synthase module.

Authors:  Alice Y Chen; David E Cane; Chaitan Khosla
Journal:  Chem Biol       Date:  2007-07

2.  Structural and mechanistic analysis of protein interactions in module 3 of the 6-deoxyerythronolide B synthase.

Authors:  Yinyan Tang; Alice Y Chen; Chu-Young Kim; David E Cane; Chaitan Khosla
Journal:  Chem Biol       Date:  2007-08

3.  Mutasynthesis of fluorosalinosporamide, a potent and reversible inhibitor of the proteasome.

Authors:  Alessandra S Eustáquio; Bradley S Moore
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

Review 4.  Natural product synthesis in the age of scalability.

Authors:  Christian A Kuttruff; Martin D Eastgate; Phil S Baran
Journal:  Nat Prod Rep       Date:  2013-12-16       Impact factor: 13.423

5.  Crystal structure of the termination module of a nonribosomal peptide synthetase.

Authors:  Alan Tanovic; Stefan A Samel; Lars-Oliver Essen; Mohamed A Marahiel
Journal:  Science       Date:  2008-06-26       Impact factor: 47.728

6.  Rational design of modular polyketide synthases: morphing the aureothin pathway into a luteoreticulin assembly line.

Authors:  Yuki Sugimoto; Ling Ding; Keishi Ishida; Christian Hertweck
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-08       Impact factor: 15.336

7.  A close look at a ketosynthase from a trans-acyltransferase modular polyketide synthase.

Authors:  Darren C Gay; Glen Gay; Abram J Axelrod; Matthew Jenner; Christoph Kohlhaas; Annette Kampa; Neil J Oldham; Jörn Piel; Adrian T Keatinge-Clay
Journal:  Structure       Date:  2014-02-06       Impact factor: 5.006

8.  Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A.

Authors:  Kazuya Yamanaka; Kirk A Reynolds; Roland D Kersten; Katherine S Ryan; David J Gonzalez; Victor Nizet; Pieter C Dorrestein; Bradley S Moore
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

9.  The missing linker: a dimerization motif located within polyketide synthase modules.

Authors:  Jianting Zheng; Christopher D Fage; Borries Demeler; David W Hoffman; Adrian T Keatinge-Clay
Journal:  ACS Chem Biol       Date:  2013-03-25       Impact factor: 5.100

10.  Trapping the dynamic acyl carrier protein in fatty acid biosynthesis.

Authors:  Chi Nguyen; Robert W Haushalter; D John Lee; Phineus R L Markwick; Joel Bruegger; Grace Caldara-Festin; Kara Finzel; David R Jackson; Fumihiro Ishikawa; Bing O'Dowd; J Andrew McCammon; Stanley J Opella; Shiou-Chuan Tsai; Michael D Burkart
Journal:  Nature       Date:  2013-12-22       Impact factor: 49.962

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  12 in total

Review 1.  Natural product discovery: past, present, and future.

Authors:  Leonard Katz; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2016-01-06       Impact factor: 3.346

2.  Synthetic biology, genome mining, and combinatorial biosynthesis of NRPS-derived antibiotics: a perspective.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2017-12-29       Impact factor: 3.346

3.  Ten-Minute Protein Purification and Surface Tethering for Continuous-Flow Biocatalysis.

Authors:  Joshua Britton; Rebekah P Dyer; Sudipta Majumdar; Colin L Raston; Gregory A Weiss
Journal:  Angew Chem Int Ed Engl       Date:  2017-01-30       Impact factor: 15.336

4.  The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry.

Authors:  Christoph H R Senges; Arwa Al-Dilaimi; Douglas H Marchbank; Daniel Wibberg; Anika Winkler; Brad Haltli; Minou Nowrousian; Jörn Kalinowski; Russell G Kerr; Julia E Bandow
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-20       Impact factor: 11.205

5.  Inversion of Extender Unit Selectivity in the Erythromycin Polyketide Synthase by Acyltransferase Domain Engineering.

Authors:  Irina Koryakina; Christian Kasey; John B McArthur; Andrew N Lowell; Joseph A Chemler; Shasha Li; Douglas A Hansen; David H Sherman; Gavin J Williams
Journal:  ACS Chem Biol       Date:  2016-11-29       Impact factor: 5.100

6.  Discovery of the actinoplanic acid pathway in Streptomyces rapamycinicus reveals a genetically conserved synergism with rapamycin.

Authors:  Peter Mrak; Philipp Krastel; Petra Pivk Lukančič; Jianshi Tao; Dominik Pistorius; Charles M Moore
Journal:  J Biol Chem       Date:  2018-10-16       Impact factor: 5.157

Review 7.  Nonribosomal peptide synthetase biosynthetic clusters of ESKAPE pathogens.

Authors:  Andrew M Gulick
Journal:  Nat Prod Rep       Date:  2017-08-02       Impact factor: 13.423

Review 8.  Expanding beyond canonical metabolism: Interfacing alternative elements, synthetic biology, and metabolic engineering.

Authors:  Kevin B Reed; Hal S Alper
Journal:  Synth Syst Biotechnol       Date:  2017-12-19

9.  Synthetic biology approaches and combinatorial biosynthesis towards heterologous lipopeptide production.

Authors:  Fu Yan; Christian Burgard; Alexander Popoff; Nestor Zaburannyi; Gregor Zipf; Josef Maier; Hubert S Bernauer; Silke C Wenzel; Rolf Müller
Journal:  Chem Sci       Date:  2018-08-08       Impact factor: 9.825

Review 10.  Towards Precision Engineering of Canonical Polyketide Synthase Domains: Recent Advances and Future Prospects.

Authors:  Carmen L Bayly; Vikramaditya G Yadav
Journal:  Molecules       Date:  2017-02-05       Impact factor: 4.411

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