Literature DB >> 26527270

Cloning, expression, crystallization and crystallographic analysis of CouR from Rhodopseudomonas palustris.

Chen Pan1, Yong Lin Hu2, Xiang Ning Jiang1, Ying Gai1.   

Abstract

CouR from Rhodopseudomonas palustris is a member of the MarR transcriptional regulator family. It regulates the expression of CouA and CouB, enzymes that are involved in the degradation of p-coumarate. In vivo, CouR binds to a DNA fragment containing the couAB promoter and suppresses the expression of CouA and CouB, while binding of p-coumaroyl-CoA attenuates its affinity towards DNA and activates the expression of CouA and CouB. Here, the crystallization and X-ray diffraction analyses of CouR alone and in complex with p-coumaroyl-CoA are reported. Apo and ligand-complexed CouR crystals diffracted to 2.5 and 3.3 Å resolution, respectively. The crystals of apo CouR belonged to space group P22121, with unit-cell parameters a = 62.78, b = 76.15, c = 87.38 Å, whereas the crystals of the CouR-ligand complex belonged to space group P212121, with unit-cell parameters a = 61.37, b = 69.82, c = 70.32 Å. The crystals were predicted to contain two CouR molecules or CouR-ligand complexes per asymmetric unit.

Entities:  

Keywords:  MarR family; crystallographic study; lignin; p-coumarate; protein–ligand complex; transcriptional regulator

Mesh:

Substances:

Year:  2015        PMID: 26527270      PMCID: PMC4631592          DOI: 10.1107/S2053230X15018968

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  13 in total

Review 1.  Bacterial transcriptional regulators for degradation pathways of aromatic compounds.

Authors:  David Tropel; Jan Roelof van der Meer
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

2.  Molecular mechanisms of ligand-mediated attenuation of DNA binding by MarR family transcriptional regulators.

Authors:  Inoka C Perera; Anne Grove
Journal:  J Mol Cell Biol       Date:  2010-08-17       Impact factor: 6.216

3.  Multiple-level regulation of genes for protocatechuate degradation in Acinetobacter baylyi includes cross-regulation.

Authors:  Simone Yasmin Siehler; Süreyya Dal; Rita Fischer; Patricia Patz; Ulrike Gerischer
Journal:  Appl Environ Microbiol       Date:  2006-11-03       Impact factor: 4.792

4.  Structural insight on the mechanism of regulation of the MarR family of proteins: high-resolution crystal structure of a transcriptional repressor from Methanobacterium thermoautotrophicum.

Authors:  Vivian Saridakis; Dea Shahinas; Xiaohui Xu; Dinesh Christendat
Journal:  J Mol Biol       Date:  2008-01-11       Impact factor: 5.469

Review 5.  Transcriptional regulation of catabolic pathways for aromatic compounds in Corynebacterium glutamicum.

Authors:  K Brinkrolf; I Brune; A Tauch
Journal:  Genet Mol Res       Date:  2006-12-07

6.  Characterization of FerC, a MarR-type transcriptional regulator, involved in transcriptional regulation of the ferulate catabolic operon in Sphingobium sp. strain SYK-6.

Authors:  Daisuke Kasai; Naofumi Kamimura; Kenta Tani; Shusuke Umeda; Tomokuni Abe; Masao Fukuda; Eiji Masai
Journal:  FEMS Microbiol Lett       Date:  2012-05-08       Impact factor: 2.742

7.  Enzymatic synthesis and purification of aromatic coenzyme a esters.

Authors:  Till Beuerle; Eran Pichersky
Journal:  Anal Biochem       Date:  2002-03-15       Impact factor: 3.365

Review 8.  The integration of macromolecular diffraction data.

Authors:  Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.