Literature DB >> 26526853

The Importance of Ligand-Receptor Conformational Pairs in Stabilization: Spotlight on the N/OFQ G Protein-Coupled Receptor.

Rebecca L Miller1, Aaron A Thompson1, Claudio Trapella2, Remo Guerrini2, Davide Malfacini3, Nilkanth Patel4, Gye Won Han5, Vadim Cherezov5, Girolamo Caló3, Vsevolod Katritch4, Raymond C Stevens6.   

Abstract

Understanding the mechanism by which ligands affect receptor conformational equilibria is key in accelerating membrane protein structural biology. In the case of G protein-coupled receptors (GPCRs), we currently pursue a brute-force approach for identifying ligands that stabilize receptors and facilitate crystallogenesis. The nociceptin/orphanin FQ peptide receptor (NOP) is a member of the opioid receptor subfamily of GPCRs for which many structurally diverse ligands are available for screening. We observed that antagonist potency is correlated with a ligand's ability to induce receptor stability (Tm) and crystallogenesis. Using this screening strategy, we solved two structures of NOP in complex with top candidate ligands SB-612111 and C-35. Docking studies indicate that while potent, stabilizing antagonists strongly favor a single binding orientation, less potent ligands can adopt multiple binding modes, contributing to their low Tm values. These results suggest a mechanism for ligand-aided crystallogenesis whereby potent antagonists stabilize a single ligand-receptor conformational pair.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  BRET; G protein-coupled receptor; GPCR; N/OFQ; NOP; Nociceptin/orphanin FQ peptide receptor; ORL-1; lipidic cubic phase; membrane protein; opioid receptor; receptor-ligand conformational pair

Mesh:

Substances:

Year:  2015        PMID: 26526853      PMCID: PMC4670589          DOI: 10.1016/j.str.2015.07.024

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  43 in total

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Journal:  J Mol Recognit       Date:  1999 May-Jun       Impact factor: 2.137

2.  Identification of a novel spiropiperidine opioid receptor-like 1 antagonist class by a focused library approach featuring 3D-pharmacophore similarity.

Authors:  Yasuhiro Goto; Sachie Arai-Otsuki; Yukari Tachibana; Daisuke Ichikawa; Satoshi Ozaki; Hiroyuki Takahashi; Yoshikazu Iwasawa; Osamu Okamoto; Shoki Okuda; Hisashi Ohta; Takeshi Sagara
Journal:  J Med Chem       Date:  2006-02-09       Impact factor: 7.446

3.  Address and message sequences for the nociceptin receptor: a structure-activity study of nociceptin-(1-13)-peptide amide.

Authors:  R Guerrini; G Calo; A Rizzi; C Bianchi; L H Lazarus; S Salvadori; P A Temussi; D Regoli
Journal:  J Med Chem       Date:  1997-06-06       Impact factor: 7.446

4.  The importance of ligands for G protein-coupled receptor stability.

Authors:  Xianjun Zhang; Raymond C Stevens; Fei Xu
Journal:  Trends Biochem Sci       Date:  2015-01-15       Impact factor: 13.807

5.  Nociceptin/orphanin FQ inhibition with SB612111 ameliorates dextran sodium sulfate-induced colitis.

Authors:  Carsten Alt; Jennifer S Lam; M Travis Harrison; Kathleen M Kershaw; Steven Samuelsson; Lawrence Toll; Annalisa D'Andrea
Journal:  Eur J Pharmacol       Date:  2012-03-16       Impact factor: 4.432

6.  UFP-101, a high affinity antagonist for the nociceptin/orphanin FQ receptor: radioligand and GTPgamma(35)S binding studies.

Authors:  J McDonald; G Calo; R Guerrini; D G Lambert
Journal:  Naunyn Schmiedebergs Arch Pharmacol       Date:  2003-01-15       Impact factor: 3.000

Review 7.  The therapeutic potential of nociceptin/orphanin FQ receptor agonists as analgesics without abuse liability.

Authors:  Ann P Lin; Mei-Chuan Ko
Journal:  ACS Chem Neurosci       Date:  2012-11-06       Impact factor: 4.418

8.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  Microscale fluorescent thermal stability assay for membrane proteins.

Authors:  Alexander I Alexandrov; Mauro Mileni; Ellen Y T Chien; Michael A Hanson; Raymond C Stevens
Journal:  Structure       Date:  2008-03       Impact factor: 5.006

10.  ORL1, a novel member of the opioid receptor family. Cloning, functional expression and localization.

Authors:  C Mollereau; M Parmentier; P Mailleux; J L Butour; C Moisand; P Chalon; D Caput; G Vassart; J C Meunier
Journal:  FEBS Lett       Date:  1994-03-14       Impact factor: 4.124

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  27 in total

1.  G protein-coupled receptors: the evolution of structural insight.

Authors:  Samantha B Gacasan; Daniel L Baker; Abby L Parrill
Journal:  AIMS Biophys       Date:  2017-08-21

2.  Structure-Based SAR in the Design of Selective or Bifunctional Nociceptin (NOP) Receptor Agonists.

Authors:  Michael E Meyer; Arpit Doshi; Dennis Yasuda; Nurulain T Zaveri
Journal:  AAPS J       Date:  2021-05-11       Impact factor: 4.009

3.  Structure-Based Discovery of New Antagonist and Biased Agonist Chemotypes for the Kappa Opioid Receptor.

Authors:  Zhong Zheng; Xi-Ping Huang; Thomas J Mangano; Rodger Zou; Xin Chen; Saheem A Zaidi; Bryan L Roth; Raymond C Stevens; Vsevolod Katritch
Journal:  J Med Chem       Date:  2017-04-03       Impact factor: 7.446

Review 4.  Insights into the function of opioid receptors from molecular dynamics simulations of available crystal structures.

Authors:  Kristen A Marino; Yi Shang; Marta Filizola
Journal:  Br J Pharmacol       Date:  2017-04-12       Impact factor: 8.739

5.  A benchmark study of loop modeling methods applied to G protein-coupled receptors.

Authors:  Lee H Wink; Daniel L Baker; Judith A Cole; Abby L Parrill
Journal:  J Comput Aided Mol Des       Date:  2019-05-23       Impact factor: 3.686

6.  Pharmacological studies on the NOP and opioid receptor agonist PWT2-[Dmt1]N/OFQ(1-13).

Authors:  Maria Camilla Cerlesi; Huiping Ding; Mark F Bird; Norikazu Kiguchi; Federica Ferrari; Davide Malfacini; Anna Rizzi; Chiara Ruzza; David G Lambert; Mei-Chuan Ko; Girolamo Calo; Remo Guerrini
Journal:  Eur J Pharmacol       Date:  2016-11-19       Impact factor: 4.432

7.  In Silico Studies Targeting G-protein Coupled Receptors for Drug Research Against Parkinson's Disease.

Authors:  Agostinho Lemos; Rita Melo; Antonio Jose Preto; Jose Guilherme Almeida; Irina Sousa Moreira; Maria Natalia Dias Soeiro Cordeiro
Journal:  Curr Neuropharmacol       Date:  2018       Impact factor: 7.363

Review 8.  Nociceptin/Orphanin FQ Peptide Receptor-Related Ligands as Novel Analgesics.

Authors:  Norikazu Kiguchi; Huiping Ding; Shiroh Kishioka; Mei-Chuan Ko
Journal:  Curr Top Med Chem       Date:  2020       Impact factor: 3.295

Review 9.  Structural biology of human GPCR drugs and endogenous ligands - insights from NMR spectroscopy.

Authors:  Guillaume Ferré; Matthew T Eddy
Journal:  Methods       Date:  2020-09-08       Impact factor: 3.608

10.  A Dynamic Picture of the Early Events in Nociceptin Binding to the NOP Receptor by Metadynamics.

Authors:  Stefano Della Longa; Alessandro Arcovito
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

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