Literature DB >> 26525784

Analysis of the Structure and Function of FOX-4 Cephamycinase.

S T Lefurgy1, V N Malashkevich2, J T Aguilan2, E Nieves2, E C Mundorff1, B Biju1, M A Noel1, R Toro2, D Baiwir3, K M Papp-Wallace4, S C Almo2, J-M Frere5, G Bou6, R A Bonomo7.   

Abstract

Class C β-lactamases poorly hydrolyze cephamycins (e.g., cefoxitin, cefotetan, and moxalactam). In the past 2 decades, a new family of plasmid-based AmpC β-lactamases conferring resistance to cefoxitin, the FOX family, has grown to include nine unique members descended from the Aeromonas caviae chromosomal AmpC. To understand the basis for the unique cephamycinase activity in the FOX family, we determined the first X-ray crystal structures of FOX-4, apo enzyme and the acyl-enzyme with its namesake compound, cefoxitin, using the Y150F deacylation-deficient variant. Notably, recombinant expression of N-terminally tagged FOX-4 also yielded an inactive adenylylated enzyme form not previously observed in β-lactamases. The posttranslational modification (PTM), which occurs on the active site Ser64, would not seem to provide a selective advantage, yet might present an opportunity for the design of novel antibacterial drugs. Substantial ligand-induced changes in the enzyme are seen in the acyl-enzyme complex, particularly the R2 loop and helix H10 (P289 to N297), with movement of F293 by 10.3 Å. Taken together, this study provides the first picture of this highly proficient class C cephamycinase, uncovers a novel PTM, and suggests a possible cephamycin resistance mechanism involving repositioning of the substrate due to the presence of S153P, N289P, and N346I substitutions in the ligand binding pocket.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 26525784      PMCID: PMC4750714          DOI: 10.1128/AAC.01887-15

Source DB:  PubMed          Journal:  Antimicrob Agents Chemother        ISSN: 0066-4804            Impact factor:   5.191


  40 in total

Review 1.  Plasmid-determined AmpC-type beta-lactamases.

Authors:  Alain Philippon; Guillaume Arlet; George A Jacoby
Journal:  Antimicrob Agents Chemother       Date:  2002-01       Impact factor: 5.191

2.  Molecular characterization of FOX-4, a new AmpC-type plasmid-mediated beta-lactamase from an Escherichia coli strain isolated in Spain.

Authors:  G Bou; A Oliver; M Ojeda; C Monzón; J Martínez-Beltrán
Journal:  Antimicrob Agents Chemother       Date:  2000-09       Impact factor: 5.191

3.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

4.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

5.  Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions.

Authors:  E Krissinel; K Henrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

6.  Structural basis for the extended substrate spectrum of CMY-10, a plasmid-encoded class C beta-lactamase.

Authors:  Jae Young Kim; Ha Il Jung; Young Jun An; Jung Hun Lee; So Jung Kim; Seok Hoon Jeong; Kye Joon Lee; Pann-Ghill Suh; Heung-Soo Lee; Sang Hee Lee; Sun-Shin Cha
Journal:  Mol Microbiol       Date:  2006-05       Impact factor: 3.501

7.  Molecular characterization of cefoxitin-resistant Escherichia coli from Canadian hospitals.

Authors:  Michael R Mulvey; Elizabeth Bryce; David A Boyd; Marianna Ofner-Agostini; Allison M Land; Andrew E Simor; Shirley Paton
Journal:  Antimicrob Agents Chemother       Date:  2005-01       Impact factor: 5.191

8.  Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency.

Authors:  R B Kapust; J Tözsér; J D Fox; D E Anderson; S Cherry; T D Copeland; D S Waugh
Journal:  Protein Eng       Date:  2001-12

9.  Kinetic properties of four plasmid-mediated AmpC beta-lactamases.

Authors:  Cédric Bauvois; Akiko Shimizu Ibuka; Almeida Celso; Jimena Alba; Yoshikazu Ishii; Jean-Marie Frère; Moreno Galleni
Journal:  Antimicrob Agents Chemother       Date:  2005-10       Impact factor: 5.191

10.  Extension of the hydrolysis spectrum of AmpC beta-lactamase of Escherichia coli due to amino acid insertion in the H-10 helix.

Authors:  Hedi Mammeri; Laurent Poirel; Patrice Nordmann
Journal:  J Antimicrob Chemother       Date:  2007-06-22       Impact factor: 5.790

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  9 in total

1.  GMP and IMP Are Competitive Inhibitors of CMY-10, an Extended-Spectrum Class C β-Lactamase.

Authors:  Jung-Hyun Na; Young Jun An; Sun-Shin Cha
Journal:  Antimicrob Agents Chemother       Date:  2017-04-24       Impact factor: 5.191

2.  Probing the Mechanism of Inactivation of the FOX-4 Cephamycinase by Avibactam.

Authors:  Michiyoshi Nukaga; Krisztina M Papp-Wallace; Tyuji Hoshino; Scott T Lefurgy; Christopher R Bethel; Melissa D Barnes; Elise T Zeiser; J Kristie Johnson; Robert A Bonomo
Journal:  Antimicrob Agents Chemother       Date:  2018-04-26       Impact factor: 5.191

3.  Emergence of Resistance to Novel β-Lactam-β-Lactamase Inhibitor Combinations Due to Horizontally Acquired AmpC (FOX-4) in Pseudomonas aeruginosa Sequence Type 308.

Authors:  Pablo A Fraile-Ribot; Cristóbal Del Rosario-Quintana; Carla López-Causapé; María A Gomis-Font; Mar Ojeda-Vargas; Antonio Oliver
Journal:  Antimicrob Agents Chemother       Date:  2019-12-20       Impact factor: 5.191

4.  Structural Insights into Catalytic Relevances of Substrate Poses in ACC-1.

Authors:  Da-Woon Bae; Ye-Eun Jung; Young Jun An; Jung-Hyun Na; Sun-Shin Cha
Journal:  Antimicrob Agents Chemother       Date:  2019-10-22       Impact factor: 5.191

5.  Molecular and Kinetic Characterization of MOX-9, a Plasmid-Mediated Enzyme Representative of a Novel Sublineage of MOX-Type Class C β-Lactamases.

Authors:  Alessandra Piccirilli; Alberto Antonelli; Marco Maria D'Andrea; Sabrina Cherubini; Mariagrazia Perilli; Gian Maria Rossolini
Journal:  Antimicrob Agents Chemother       Date:  2022-08-30       Impact factor: 5.938

Review 6.  Class C β-Lactamases: Molecular Characteristics.

Authors:  Alain Philippon; Guillaume Arlet; Roger Labia; Bogdan I Iorga
Journal:  Clin Microbiol Rev       Date:  2022-04-18       Impact factor: 50.129

7.  Structures of FOX-4 Cephamycinase in Complex with Transition-State Analog Inhibitors.

Authors:  Scott T Lefurgy; Emilia Caselli; Magdalena A Taracila; Vladimir N Malashkevich; Beena Biju; Krisztina M Papp-Wallace; Jeffrey B Bonanno; Fabio Prati; Steven C Almo; Robert A Bonomo
Journal:  Biomolecules       Date:  2020-04-27

8.  In vitro and in vivo Inhibitory Activity of NADPH Against the AmpC BER Class C β-Lactamase.

Authors:  Jung-Hyun Na; Tae Hee Lee; Soo-Bong Park; Min-Kyu Kim; Bo-Gyeong Jeong; Kyung Min Chung; Sun-Shin Cha
Journal:  Front Cell Infect Microbiol       Date:  2018-12-21       Impact factor: 5.293

9.  D3PM: a comprehensive database for protein motions ranging from residue to domain.

Authors:  Cheng Peng; Xinben Zhang; Zhijian Xu; Zhaoqiang Chen; Yanqing Yang; Tingting Cai; Weiliang Zhu
Journal:  BMC Bioinformatics       Date:  2022-02-14       Impact factor: 3.169

  9 in total

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