Literature DB >> 26523558

Signatures of selection identify loci associated with fat tail in sheep.

B Moioli, F Pilla, E Ciani.   

Abstract

Identification of genomic regions that have been targets of selection for phenotypic traits is one of the most challenging applications of dense marker panels in animal genetics. In this study, a genomewide scan using approximately 50,000 SNP was performed in an attempt to identify genomic regions associated with fat deposition in sheep, the importance of this not only being limited to livestock facing future climate changes but also for elucidating the physiology of lipid metabolism. The genotyping results obtained with the Ovine SNP50K BeadChip in 2 fat tail breeds were compared with those obtained in 13 thin tail breeds. Direct sequencing of the annotated genes located in proximity to the markers with opposite allele frequency in thin tail vs. fat tail sheep gave additional SNP of interest. To further confirm the results of the genomewide scan, we genotyped the SNP within these genes in the 2 groups of sheep. A missense mutation in the gene, with different allele frequency in the 2 groups, was detected. The results indicated and as the most probable genes involved in the fat tail phenotype.

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Year:  2015        PMID: 26523558     DOI: 10.2527/jas.2015-9389

Source DB:  PubMed          Journal:  J Anim Sci        ISSN: 0021-8812            Impact factor:   3.159


  21 in total

1.  Unveiling genomic regions that underlie differences between Afec-Assaf sheep and its parental Awassi breed.

Authors:  Eyal Seroussi; Alexander Rosov; Andrey Shirak; Alon Lam; Elisha Gootwine
Journal:  Genet Sel Evol       Date:  2017-02-10       Impact factor: 4.297

2.  Genomic Reconstruction of the History of Native Sheep Reveals the Peopling Patterns of Nomads and the Expansion of Early Pastoralism in East Asia.

Authors:  Yong-Xin Zhao; Ji Yang; Feng-Hua Lv; Xiao-Ju Hu; Xing-Long Xie; Min Zhang; Wen-Rong Li; Ming-Jun Liu; Yu-Tao Wang; Jin-Quan Li; Yong-Gang Liu; Yan-Ling Ren; Feng Wang; EEr Hehua; Juha Kantanen; Johannes Arjen Lenstra; Jian-Lin Han; Meng-Hua Li
Journal:  Mol Biol Evol       Date:  2017-09-01       Impact factor: 16.240

3.  Genomic Scan for Selection Signature Reveals Fat Deposition in Chinese Indigenous Sheep with Extreme Tail Types.

Authors:  Fuping Zhao; Tianyu Deng; Liangyu Shi; Wenwen Wang; Qin Zhang; Lixin Du; Lixian Wang
Journal:  Animals (Basel)       Date:  2020-04-29       Impact factor: 2.752

4.  On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools.

Authors:  Elena Ciani; Salvatore Mastrangelo; Anne Da Silva; Fabio Marroni; Maja Ferenčaković; Paolo Ajmone-Marsan; Hayley Baird; Mario Barbato; Licia Colli; Chiara Delvento; Toni Dovenski; Gregor Gorjanc; Stephen J G Hall; Anila Hoda; Meng-Hua Li; Božidarka Marković; John McEwan; Mohammad H Moradi; Otsanda Ruiz-Larrañaga; Dragana Ružić-Muslić; Dragica Šalamon; Mojca Simčič; Ondrej Stepanek; Ino Curik; Vlatka Cubric-Curik; Johannes A Lenstra
Journal:  Genet Sel Evol       Date:  2020-05-14       Impact factor: 4.297

5.  Novel and known signals of selection for fat deposition in domestic sheep breeds from Africa and Eurasia.

Authors:  Salvatore Mastrangelo; Hussain Bahbahani; Bianca Moioli; Abulgasim Ahbara; Mohammed Al Abri; Faisal Almathen; Anne da Silva; Ibrahim Belabdi; Baldassare Portolano; Joram M Mwacharo; Olivier Hanotte; Fabio Pilla; Elena Ciani
Journal:  PLoS One       Date:  2019-06-14       Impact factor: 3.240

6.  Association Between BMP2 Functional Polymorphisms and Sheep Tail Type.

Authors:  Zengkui Lu; Jianbin Liu; Jilong Han; Bohui Yang
Journal:  Animals (Basel)       Date:  2020-04-23       Impact factor: 2.752

7.  Selection signature analysis reveals genes underlying sheep milking performance.

Authors:  Zehu Yuan; Wanhong Li; Fadi Li; Xiangpeng Yue
Journal:  Arch Anim Breed       Date:  2019-08-08

8.  A Combined Multi-Cohort Approach Reveals Novel and Known Genome-Wide Selection Signatures for Wool Traits in Merino and Merino-Derived Sheep Breeds.

Authors:  Sami Megdiche; Salvatore Mastrangelo; Mohamed Ben Hamouda; Johannes A Lenstra; Elena Ciani
Journal:  Front Genet       Date:  2019-10-25       Impact factor: 4.599

9.  GLIS1, a potential candidate gene affect fat deposition in sheep tail.

Authors:  Rongsong Luo; Xiaoran Zhang; Likai Wang; Li Zhang; Guangpeng Li; Zhong Zheng
Journal:  Mol Biol Rep       Date:  2021-06-16       Impact factor: 2.316

10.  Genome-Wide Variation, Candidate Regions and Genes Associated With Fat Deposition and Tail Morphology in Ethiopian Indigenous Sheep.

Authors:  Abulgasim Ahbara; Hussain Bahbahani; Faisal Almathen; Mohammed Al Abri; Mukhtar Omar Agoub; Ayelle Abeba; Adebabay Kebede; Hassan Hussein Musa; Salvatore Mastrangelo; Fabio Pilla; Elena Ciani; Olivier Hanotte; Joram M Mwacharo
Journal:  Front Genet       Date:  2019-01-09       Impact factor: 4.599

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