Literature DB >> 26521004

Note: Model identification and analysis of bivalent analyte surface plasmon resonance data.

Purushottam Babu Tiwari1, Aykut Üren1, Jin He2, Yesim Darici2, Xuewen Wang2.   

Abstract

Surface plasmon resonance (SPR) is a widely used, affinity based, label-free biophysical technique to investigate biomolecular interactions. The extraction of rate constants requires accurate identification of the particular binding model. The bivalent analyte model involves coupled non-linear differential equations. No clear procedure to identify the bivalent analyte mechanism has been established. In this report, we propose a unique signature for the bivalent analyte model. This signature can be used to distinguish the bivalent analyte model from other biphasic models. The proposed method is demonstrated using experimentally measured SPR sensorgrams.

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Year:  2015        PMID: 26521004      PMCID: PMC4617740          DOI: 10.1063/1.4933318

Source DB:  PubMed          Journal:  Rev Sci Instrum        ISSN: 0034-6748            Impact factor:   1.523


  19 in total

1.  Surface plasmon resonance study of the molecular recognition between polymerase and DNA containing various mismatches and conformational changes of DNA-protein complexes.

Authors:  Pui Yan Tsoi; Mengsu Yang
Journal:  Biosens Bioelectron       Date:  2004-05-15       Impact factor: 10.618

2.  Kinetic analysis of the binding of monomeric and dimeric ephrins to Eph receptors: correlation to function in a growth cone collapse assay.

Authors:  Kumar B Pabbisetty; Xin Yue; Chen Li; Juha-Pekka Himanen; Renping Zhou; Dimitar B Nikolov; Longqin Hu
Journal:  Protein Sci       Date:  2007-03       Impact factor: 6.725

3.  TonB induces conformational changes in surface-exposed loops of FhuA, outer membrane receptor of Escherichia coli.

Authors:  Karron J James; Mark A Hancock; Violaine Moreau; Franck Molina; James W Coulton
Journal:  Protein Sci       Date:  2008-07-24       Impact factor: 6.725

4.  CLAMP: a biosensor kinetic data analysis program.

Authors:  D G Myszka; T A Morton
Journal:  Trends Biochem Sci       Date:  1998-04       Impact factor: 13.807

5.  Analyzing surface plasmon resonance data: choosing a correct biphasic model for interpretation.

Authors:  Purushottam Babu Tiwari; Xuewen Wang; Jin He; Yesim Darici
Journal:  Rev Sci Instrum       Date:  2015-03       Impact factor: 1.523

6.  Design and analysis of a spectro-angular surface plasmon resonance biosensor operating in the visible spectrum.

Authors:  Sandrine Filion-Côté; Philip J R Roche; Amir M Foudeh; Maryam Tabrizian; Andrew G Kirk
Journal:  Rev Sci Instrum       Date:  2014-09       Impact factor: 1.523

Review 7.  Protein-protein interactions: methods for detection and analysis.

Authors:  E M Phizicky; S Fields
Journal:  Microbiol Rev       Date:  1995-03

8.  Functional evaluation of novel soluble insulin-like growth factor (IGF)-II-specific ligand traps based on modified domain 11 of the human IGF2 receptor.

Authors:  Stuart N Prince; Emily J Foulstone; Oliver J Zaccheo; Christopher Williams; Andrew Bassim Hassan
Journal:  Mol Cancer Ther       Date:  2007-02       Impact factor: 6.261

9.  Kinetic analysis of binding between Shiga toxin and receptor glycolipid Gb3Cer by surface plasmon resonance.

Authors:  H Nakajima; N Kiyokawa; Y U Katagiri; T Taguchi; T Suzuki; T Sekino; K Mimori; T Ebata; M Saito; H Nakao; T Takeda; J Fujimoto
Journal:  J Biol Chem       Date:  2001-09-13       Impact factor: 5.157

10.  The Staphylococcus aureus protein Sbi acts as a complement inhibitor and forms a tripartite complex with host complement Factor H and C3b.

Authors:  Katrin Haupt; Michael Reuter; Jean van den Elsen; Julia Burman; Steffi Hälbich; Julia Richter; Christine Skerka; Peter F Zipfel
Journal:  PLoS Pathog       Date:  2008-12-26       Impact factor: 6.823

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  1 in total

1.  SPRD: a surface plasmon resonance database of common factors for better experimental planning.

Authors:  Purushottam B Tiwari; Camelia Bencheqroun; Mario Lemus; Taryn Shaw; Marilyn Kouassi-Brou; Adil Alaoui; Aykut Üren
Journal:  BMC Mol Cell Biol       Date:  2021-03-06
  1 in total

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