Literature DB >> 26519172

Visualization and Differential Analysis of Protein Expression Data Using R.

Tomé S Silva1, Nadège Richard2.   

Abstract

Data analysis is essential to derive meaningful conclusions from proteomic data. This chapter describes ways of performing common data visualization and differential analysis tasks on gel-based proteomic datasets using a freely available statistical software package (R). A workflow followed is illustrated using a synthetic dataset as example.

Keywords:  Data visualization; Differential analysis; Feature selection; Heatmap; Hypothesis testing; Independent component analysis; Multidimensional scaling; Proteomics; R; Two-dimensional gel electrophoresis

Mesh：

Substances：

Year:  2016        PMID： 26519172     DOI： 10.1007/978-1-4939-3106-4_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  6 in total

1.  Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap.

Authors:  Jüri Reimand; Ruth Isserlin; Veronique Voisin; Mike Kucera; Christian Tannus-Lopes; Asha Rostamianfar; Lina Wadi; Mona Meyer; Jeff Wong; Changjiang Xu; Daniele Merico; Gary D Bader
Journal:  Nat Protoc       Date:  2019-02       Impact factor: 13.491

2.  Atrial fibrillation rhythm is associated with marked changes in metabolic and myofibrillar protein expression in left atrial appendage.

Authors:  Julie H Rennison; Ling Li; Cheryl R Lin; Beth S Lovano; Laurie Castel; Sojin Youn Wass; Catherine C Cantlay; Meghan McHale; A Marc Gillinov; Reena Mehra; Belinda B Willard; Jonathan D Smith; Mina K Chung; John Barnard; David R Van Wagoner
Journal:  Pflugers Arch       Date:  2021-01-16       Impact factor: 3.657

3.  Transcriptome profile analysis reveals the regulation mechanism of floral sex differentiation in Jatropha curcas L.

Authors:  Wenkai Hui; Yuantong Yang; Guojiang Wu; Changcao Peng; Xiaoyang Chen; Mohamed Zaky Zayed
Journal:  Sci Rep       Date:  2017-11-27       Impact factor: 4.379

4.  Smoking patients with laryngeal cancer screened with a novel immunogenomics-based prognostic signature.

Authors:  Yujie Shen; Han Zhou; Shikun Dong; Weida Dong; Liqing Zhang
Journal:  Front Genet       Date:  2022-07-14       Impact factor: 4.772

5.  Function of ORFC of the polyketide synthase gene cluster on fatty acid accumulation in Schizochytrium limacinum SR21.

Authors:  Yanyan Shi; Zhen Chen; Yixin Li; Xingyu Cao; Lijie Yang; Yiyuan Xu; Zhipeng Li; Ning He
Journal:  Biotechnol Biofuels       Date:  2021-07-23       Impact factor: 6.040

6.  Analysis of Transcriptional Responses of the Inflorescence Meristems in Jatropha curcas Following Gibberellin Treatment.

Authors:  Wen-Kai Hui; Yi Wang; Xiao-Yang Chen; Mohamed Zaky Zayed; Guo-Jiang Wu
Journal:  Int J Mol Sci       Date:  2018-02-01       Impact factor: 5.923
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.