Literature DB >> 26517730

Detection and identification of protein citrullination in complex biological systems.

Kathleen W Clancy1, Eranthie Weerapana2, Paul R Thompson3.   

Abstract

Protein citrullination is a post-translational modification of arginine that is catalyzed by the Protein Arginine Deiminase (PAD) family of enzymes. Aberrantly increased citrullination is associated with a host of inflammatory diseases and cancer and PAD inhibitors have shown remarkable efficacy in a range of diseases including rheumatoid arthritis, lupus, atherosclerosis, and ulcerative colitis. In rheumatoid arthritis, citrullinated proteins serve as key antigens for rheumatoid arthritis-associated autoantibodies. These data suggest that citrullinated proteins may serve more generally as biomarkers of specific disease states, however, the identification of citrullinated residues remains challenging due to the small 1Da mass change that occurs upon citrullination. Herein, we highlight the available techniques to identify citrullinated proteins/residues focusing on advanced MS techniques as well as chemical derivatization strategies that are currently being employed to identify citrullinated proteins as well as the specific residues modified within those proteins.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26517730      PMCID: PMC4731267          DOI: 10.1016/j.cbpa.2015.10.014

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  52 in total

Review 1.  Anti-citrullinated protein antibodies and their clinical utility in rheumatoid arthritis.

Authors:  Sima Sh Farid; Gholamreza Azizi; Abbas Mirshafiey
Journal:  Int J Rheum Dis       Date:  2013-07-15       Impact factor: 2.454

2.  Anticancer peptidylarginine deiminase (PAD) inhibitors regulate the autophagy flux and the mammalian target of rapamycin complex 1 activity.

Authors:  Yuji Wang; Pingxin Li; Shu Wang; Jing Hu; Xiangyun Amy Chen; Jianhui Wu; Megan Fisher; Kira Oshaben; Na Zhao; Ying Gu; Dong Wang; Gong Chen; Yanming Wang
Journal:  J Biol Chem       Date:  2012-05-17       Impact factor: 5.157

3.  Suppression of colitis in mice by Cl-amidine: a novel peptidylarginine deiminase inhibitor.

Authors:  Alexander A Chumanevich; Corey P Causey; Bryan A Knuckley; Justin E Jones; Deepak Poudyal; Alena P Chumanevich; Tia Davis; Lydia E Matesic; Paul R Thompson; Lorne J Hofseth
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2011-03-17       Impact factor: 4.052

4.  Identification and characterization of citrulline-modified brain proteins by combining HCD and CID fragmentation.

Authors:  Zhicheng Jin; Zongming Fu; Jun Yang; Juan Troncosco; Allen D Everett; Jennifer E Van Eyk
Journal:  Proteomics       Date:  2013-08-07       Impact factor: 3.984

5.  Synovial intracellular citrullinated proteins colocalizing with peptidyl arginine deiminase as pathophysiologically relevant antigenic determinants of rheumatoid arthritis-specific humoral autoimmunity.

Authors:  Leen De Rycke; Anthony P Nicholas; Tineke Cantaert; Elli Kruithof; Joshua D Echols; Bart Vandekerckhove; Eric M Veys; Filip De Keyser; Dominique Baeten
Journal:  Arthritis Rheum       Date:  2005-08

6.  Citrulline is an essential constituent of antigenic determinants recognized by rheumatoid arthritis-specific autoantibodies.

Authors:  G A Schellekens; B A de Jong; F H van den Hoogen; L B van de Putte; W J van Venrooij
Journal:  J Clin Invest       Date:  1998-01-01       Impact factor: 14.808

7.  Seeing citrulline: development of a phenylglyoxal-based probe to visualize protein citrullination.

Authors:  Kevin L Bicker; Venkataraman Subramanian; Alexander A Chumanevich; Lorne J Hofseth; Paul R Thompson
Journal:  J Am Chem Soc       Date:  2012-10-03       Impact factor: 15.419

8.  Detection of citrulline residues in deiminated proteins on polyvinylidene difluoride membrane.

Authors:  T Senshu; T Sato; T Inoue; K Akiyama; H Asaga
Journal:  Anal Biochem       Date:  1992-05-15       Impact factor: 3.365

9.  The rheumatoid arthritis synovial fluid citrullinome reveals novel citrullinated epitopes in apolipoprotein E, myeloid nuclear differentiation antigen, and β-actin.

Authors:  Joyce J B C van Beers; Carla M Schwarte; Judith Stammen-Vogelzangs; Els Oosterink; Borut Božič; Ger J M Pruijn
Journal:  Arthritis Rheum       Date:  2013-01

10.  Human PAD4 regulates histone arginine methylation levels via demethylimination.

Authors:  Yanming Wang; Joanna Wysocka; Joyce Sayegh; Young-Ho Lee; Julie R Perlin; Lauriebeth Leonelli; Lakshmi S Sonbuchner; Charles H McDonald; Richard G Cook; Yali Dou; Robert G Roeder; Steven Clarke; Michael R Stallcup; C David Allis; Scott A Coonrod
Journal:  Science       Date:  2004-09-02       Impact factor: 47.728

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  17 in total

1.  The Rheumatoid Arthritis-Associated Citrullinome.

Authors:  Ronak Tilvawala; Son Hong Nguyen; Aaron J Maurais; Venkatesh V Nemmara; Mitesh Nagar; Ari J Salinger; Sunil Nagpal; Eranthie Weerapana; Paul R Thompson
Journal:  Cell Chem Biol       Date:  2018-04-05       Impact factor: 8.116

2.  Citrullinome of Porphyromonas gingivalis Outer Membrane Vesicles: Confident Identification of Citrullinated Peptides.

Authors:  Daniel Nyberg Larsen; Christian Engelbrecht Mikkelsen; Mads Kierkegaard; Grzegorz P Bereta; Zuzanna Nowakowska; Jakub Z Kaczmarek; Jan Potempa; Peter Højrup
Journal:  Mol Cell Proteomics       Date:  2019-11-21       Impact factor: 5.911

Review 3.  Interleukin-9 and T helper type 9 cells in rheumatic diseases.

Authors:  F Ciccia; G Guggino; A Ferrante; P Cipriani; R Giacomelli; G Triolo
Journal:  Clin Exp Immunol       Date:  2016-08       Impact factor: 4.330

4.  A Streamlined Data Analysis Pipeline for the Identification of Sites of Citrullination.

Authors:  Aaron J Maurais; Ari J Salinger; Micaela Tobin; Scott A Shaffer; Eranthie Weerapana; Paul R Thompson
Journal:  Biochemistry       Date:  2021-09-07       Impact factor: 3.321

5.  12-Plex DiLeu Isobaric Labeling Enabled High-Throughput Investigation of Citrullination Alterations in the DNA Damage Response.

Authors:  Zihui Li; Bin Wang; Qinying Yu; Yatao Shi; Lingjun Li
Journal:  Anal Chem       Date:  2022-02-07       Impact factor: 8.008

6.  Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-Search Delta Score Strategy.

Authors:  Xi Wang; Adam C Swensen; Tong Zhang; Paul D Piehowski; Matthew J Gaffrey; Matthew E Monroe; Ying Zhu; Hailiang Dong; Wei-Jun Qian
Journal:  J Proteome Res       Date:  2020-03-23       Impact factor: 4.466

7.  Citrullination Inactivates Nicotinamide- N-methyltransferase.

Authors:  Venkatesh V Nemmara; Ronak Tilvawala; Ari J Salinger; Lacey Miller; Son Hong Nguyen; Eranthie Weerapana; Paul R Thompson
Journal:  ACS Chem Biol       Date:  2018-08-08       Impact factor: 5.100

Review 8.  Where, How, and When: Positioning Posttranslational Modification Within Type 1 Diabetes Pathogenesis.

Authors:  Rene J McLaughlin; Matthew P Spindler; Menno van Lummel; Bart O Roep
Journal:  Curr Diab Rep       Date:  2016-07       Impact factor: 4.810

9.  Reactivity-Based Screening for Citrulline-Containing Natural Products Reveals a Family of Bacterial Peptidyl Arginine Deiminases.

Authors:  Lonnie A Harris; Patricia M B Saint-Vincent; Xiaorui Guo; Graham A Hudson; Adam J DiCaprio; Lingyang Zhu; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2020-11-29       Impact factor: 5.100

Review 10.  Citrullination and PAD Enzyme Biology in Type 1 Diabetes - Regulators of Inflammation, Autoimmunity, and Pathology.

Authors:  Mei-Ling Yang; Fernanda M C Sodré; Mark J Mamula; Lut Overbergh
Journal:  Front Immunol       Date:  2021-06-01       Impact factor: 7.561

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