Literature DB >> 26515826

Protael: protein data visualization library for the web.

Mayya Sedova1, Lukasz Jaroszewski1, Adam Godzik1.   

Abstract

UNLABELLED: Protael is a JavaScript library for creating interactive visualizations of biological sequences and various associated data. It allows users to generate high-quality vector graphics (SVG) and integrate it into web pages.
AVAILABILITY AND IMPLEMENTATION: Protael distribution, documentation and examples are freely available at http://protael.org; source code is hosted at https://github.com/sanshu/protaeljs.
© The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Mesh:

Substances:

Year:  2015        PMID: 26515826      PMCID: PMC5963358          DOI: 10.1093/bioinformatics/btv605

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  8 in total

1.  Visualization of protein sequence features using JavaScript and SVG with pViz.js.

Authors:  Kiran Mukhyala; Alexandre Masselot
Journal:  Bioinformatics       Date:  2014-08-21       Impact factor: 6.937

2.  Improving the chances of successful protein structure determination with a random forest classifier.

Authors:  Samad Jahandideh; Lukasz Jaroszewski; Adam Godzik
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-02-15

3.  Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences.

Authors:  Daniel Jaschob; Trisha N Davis; Michael Riffle
Journal:  BMC Res Notes       Date:  2015-03-07

4.  Cancer3D: understanding cancer mutations through protein structures.

Authors:  Eduard Porta-Pardo; Thomas Hrabe; Adam Godzik
Journal:  Nucleic Acids Res       Date:  2014-11-11       Impact factor: 16.971

5.  Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV).

Authors:  Andrew C R Martin
Journal:  F1000Res       Date:  2014-10-23

6.  FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences.

Authors:  Leyla Garcia; Guy Yachdav; Maria-Jesus Martin
Journal:  F1000Res       Date:  2014-02-13

7.  bNAber: database of broadly neutralizing HIV antibodies.

Authors:  Alexey M Eroshkin; Andrew LeBlanc; Dana Weekes; Kai Post; Zhanwen Li; Akhil Rajput; Sal T Butera; Dennis R Burton; Adam Godzik
Journal:  Nucleic Acids Res       Date:  2013-11-07       Impact factor: 16.971

8.  SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences.

Authors:  Daniel Jaschob; Trisha N Davis; Michael Riffle
Journal:  BMC Res Notes       Date:  2014-07-23
  8 in total
  5 in total

1.  Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence.

Authors:  Mayya Sedova; Lukasz Jaroszewski; Arghavan Alisoltani; Adam Godzik
Journal:  Bioinformatics       Date:  2020-08-01       Impact factor: 6.937

2.  Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets.

Authors:  Mayya Sedova; Mallika Iyer; Zhanwen Li; Lukasz Jaroszewski; Kai W Post; Thomas Hrabe; Eduard Porta-Pardo; Adam Godzik
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

3.  PrankWeb: a web server for ligand binding site prediction and visualization.

Authors:  Lukas Jendele; Radoslav Krivak; Petr Skoda; Marian Novotny; David Hoksza
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

4.  PDBFlex: exploring flexibility in protein structures.

Authors:  Thomas Hrabe; Zhanwen Li; Mayya Sedova; Piotr Rotkiewicz; Lukasz Jaroszewski; Adam Godzik
Journal:  Nucleic Acids Res       Date:  2015-11-28       Impact factor: 16.971

5.  Plant data visualisation using network graphs.

Authors:  Afrina Adlyna Mohamad-Matrol; Siow-Wee Chang; Arpah Abu
Journal:  PeerJ       Date:  2018-08-31       Impact factor: 2.984

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.