António Múrias dos Santos1, Maria Pilar Cabezas2, Ana Isabel Tavares1, Raquel Xavier3, Madalena Branco2. 1. Faculdade de Ciências da Universidade do Porto, 4169-007 Porto, Portugal CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, 4485-661 Vairão, Portugal and. 2. CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, 4485-661 Vairão, Portugal and. 3. CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, 4485-661 Vairão, Portugal and School of Biological Sciences, Cardiff University, Cardiff, CF10 3AX, UK.
Abstract
MOTIVATION: TCS is a widely used haplotype network reconstruction software, but lacks the capability of overlapping genetic with geographic structure, which is often a first step in phylogeographic analysis. RESULTS: tcsBU is a web-based program that extends the capabilities of TCS, by implementing haplotype classification into an arbitrary user-defined scheme, which is displayed as pie-chart like graphs embedded into the network. Taking advantage of modern graphic libraries, tcsBU also improves the speed at which the final network layout is reached. Networks can be saved as a Scalable Vector Graphics format. AVAILABILITY AND IMPLEMENTATION: tcsBU is available on-line at http://cibio.up.pt/software/tcsBU/. The source code is freely available from https://github.com/sairum/tcsbu/ under a standard MIT license.
MOTIVATION:TCS is a widely used haplotype network reconstruction software, but lacks the capability of overlapping genetic with geographic structure, which is often a first step in phylogeographic analysis. RESULTS: tcsBU is a web-based program that extends the capabilities of TCS, by implementing haplotype classification into an arbitrary user-defined scheme, which is displayed as pie-chart like graphs embedded into the network. Taking advantage of modern graphic libraries, tcsBU also improves the speed at which the final network layout is reached. Networks can be saved as a Scalable Vector Graphics format. AVAILABILITY AND IMPLEMENTATION: tcsBU is available on-line at http://cibio.up.pt/software/tcsBU/. The source code is freely available from https://github.com/sairum/tcsbu/ under a standard MIT license.
Authors: Beatriz Tomé; Ana Pereira; Fátima Jorge; Miguel A Carretero; D James Harris; Ana Perera Journal: Parasit Vectors Date: 2018-03-19 Impact factor: 3.876
Authors: Christine M Jones; Yoosook Lee; Andrew Kitchen; Travis Collier; Julia C Pringle; Mbanga Muleba; Seth Irish; Jennifer C Stevenson; Maureen Coetzee; Anthony J Cornel; Douglas E Norris; Giovanna Carpi Journal: Sci Rep Date: 2018-06-13 Impact factor: 4.379