Literature DB >> 26507789

A Rigid Hinge Region Is Necessary for High-Affinity Binding of Dimannose to Cyanovirin and Associated Constructs.

Zhen Li1, Ashini Bolia2, Jason D Maxwell2, Andrey A Bobkov3, Giovanna Ghirlanda2, S Banu Ozkan4, Claudio J Margulis1.   

Abstract

Mutations in the hinge region of cyanovirin-N (CVN) dictate its preferential oligomerization state. Constructs with the Pro51Gly mutation preferentially exist as monomers, whereas wild-type cyanovirin can form domain-swapped dimers under certain conditions. Because the hinge region is an integral part of the high-affinity binding site of CVN, we investigated whether this mutation affects the shape, flexibility, and binding affinity of domain B for dimannose. Our studies indicate that the capability of monomeric wild-type CVN to resist mechanical perturbations is enhanced when compared to that of constructs in which the hinge region is more flexible. Our computational results also show that enhanced flexibility leads to blocking of the binding site by allowing different rotational isomeric states of Asn53. Moreover, at higher temperatures, this observed flexibility leads to an interaction between Asn53 and Asn42, further hindering access to the binding site. On the basis of these results, we predicted that binding affinity for dimannose would be more favorable for cyanovirin constructs containing a wild-type hinge region, whereas affinity would be impaired in the case of mutants containing Pro51Gly. Experimental characterization by isothermal titration calorimetry of a set of cyanovirin mutants confirms this hypothesis. Those possessing the Pro51Gly mutation are consistently inferior binders.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26507789     DOI: 10.1021/acs.biochem.5b00635

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

1.  Exploiting Uniformly 13C-Labeled Carbohydrates for Probing Carbohydrate-Protein Interactions by NMR Spectroscopy.

Authors:  Gustav Nestor; Taigh Anderson; Stefan Oscarson; Angela M Gronenborn
Journal:  J Am Chem Soc       Date:  2017-04-21       Impact factor: 15.419

2.  Ancient thioredoxins evolved to modern-day stability-function requirement by altering native state ensemble.

Authors:  Tushar Modi; Jonathan Huihui; Kingshuk Ghosh; S Banu Ozkan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-19       Impact factor: 6.237

3.  Investigating the effects of point mutations on the affinity between the cyanobacterial lectin microvirin and high mannose-type glycans present on the HIV envelope glycoprotein.

Authors:  Rafael Conceição de Souza; Gabriela de Medeiros Muniz; Andrei Santos Siqueira; Adonis de Melo Lima; Alessandra Pereira da Silva; Evonnildo Costa Gonçalves; João Lídio da Silva Gonçalves Vianez Júnior
Journal:  J Mol Model       Date:  2016-10-22       Impact factor: 1.810

4.  Dynamic allostery highlights the evolutionary differences between the CoV-1 and CoV-2 main proteases.

Authors:  Paul Campitelli; Jin Lu; S Banu Ozkan
Journal:  Biophys J       Date:  2022-03-15       Impact factor: 3.699

5.  Plant-expressed cocaine hydrolase variants of butyrylcholinesterase exhibit altered allosteric effects of cholinesterase activity and increased inhibitor sensitivity.

Authors:  Katherine E Larrimore; I Can Kazan; Latha Kannan; R Player Kendle; Tameem Jamal; Matthew Barcus; Ashini Bolia; Stephen Brimijoin; Chang-Guo Zhan; S Banu Ozkan; Tsafrir S Mor
Journal:  Sci Rep       Date:  2017-09-05       Impact factor: 4.379

6.  Hinge-shift mechanism as a protein design principle for the evolution of β-lactamases from substrate promiscuity to specificity.

Authors:  Tushar Modi; Valeria A Risso; Sergio Martinez-Rodriguez; Jose A Gavira; Mubark D Mebrat; Wade D Van Horn; Jose M Sanchez-Ruiz; S Banu Ozkan
Journal:  Nat Commun       Date:  2021-03-25       Impact factor: 14.919

7.  Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants.

Authors:  Nicholas J Ose; Brandon M Butler; Avishek Kumar; I Can Kazan; Maxwell Sanderford; Sudhir Kumar; S Banu Ozkan
Journal:  PLoS Comput Biol       Date:  2022-04-07       Impact factor: 4.779

8.  Mannosylated hemagglutinin peptides bind cyanovirin-N independent of disulfide-bonds in complementary binding sites.

Authors:  Philipp E Schilling; Georg Kontaxis; Martin Dragosits; Robert H Schiestl; Christian F W Becker; Irene Maier
Journal:  RSC Adv       Date:  2020-03-17       Impact factor: 3.361

9.  The Role of Rigid Residues in Modulating TEM-1 β-Lactamase Function and Thermostability.

Authors:  Bethany Kolbaba-Kartchner; I Can Kazan; Jeremy H Mills; S Banu Ozkan
Journal:  Int J Mol Sci       Date:  2021-03-12       Impact factor: 5.923

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.