Literature DB >> 26506899

Standardized phenotyping enhances Mendelian disease gene identification.

Lisenka E L M Vissers1, Joris A Veltman1,2.   

Abstract

Whole-exome sequencing has revolutionized the identification of genes with dominant disease-associated variants for rare clinically and genetically heterogeneous disorders, but the identification of genes with recessive disease-associated variants has been less successful. A new study now provides a framework integrating Mendelian variant filtering with statistical assessments of patients' genotypes and phenotypes, thereby catalyzing the discovery of novel mutations associated with recessive disease.

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Year:  2015        PMID: 26506899     DOI: 10.1038/ng.3425

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  12 in total

1.  Molecular findings among patients referred for clinical whole-exome sequencing.

Authors:  Yaping Yang; Donna M Muzny; Fan Xia; Zhiyv Niu; Richard Person; Yan Ding; Patricia Ward; Alicia Braxton; Min Wang; Christian Buhay; Narayanan Veeraraghavan; Alicia Hawes; Theodore Chiang; Magalie Leduc; Joke Beuten; Jing Zhang; Weimin He; Jennifer Scull; Alecia Willis; Megan Landsverk; William J Craigen; Mir Reza Bekheirnia; Asbjorg Stray-Pedersen; Pengfei Liu; Shu Wen; Wendy Alcaraz; Hong Cui; Magdalena Walkiewicz; Jeffrey Reid; Matthew Bainbridge; Ankita Patel; Eric Boerwinkle; Arthur L Beaudet; James R Lupski; Sharon E Plon; Richard A Gibbs; Christine M Eng
Journal:  JAMA       Date:  2014-11-12       Impact factor: 56.272

2.  Diagnostic exome sequencing in persons with severe intellectual disability.

Authors:  Joep de Ligt; Marjolein H Willemsen; Bregje W M van Bon; Tjitske Kleefstra; Helger G Yntema; Thessa Kroes; Anneke T Vulto-van Silfhout; David A Koolen; Petra de Vries; Christian Gilissen; Marisol del Rosario; Alexander Hoischen; Hans Scheffer; Bert B A de Vries; Han G Brunner; Joris A Veltman; Lisenka E L M Vissers
Journal:  N Engl J Med       Date:  2012-10-03       Impact factor: 91.245

3.  The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease.

Authors:  Peter N Robinson; Sebastian Köhler; Sebastian Bauer; Dominik Seelow; Denise Horn; Stefan Mundlos
Journal:  Am J Hum Genet       Date:  2008-10-23       Impact factor: 11.025

4.  The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease.

Authors:  Tudor Groza; Sebastian Köhler; Dawid Moldenhauer; Nicole Vasilevsky; Gareth Baynam; Tomasz Zemojtel; Lynn Marie Schriml; Warren Alden Kibbe; Paul N Schofield; Tim Beck; Drashtti Vasant; Anthony J Brookes; Andreas Zankl; Nicole L Washington; Christopher J Mungall; Suzanna E Lewis; Melissa A Haendel; Helen Parkinson; Peter N Robinson
Journal:  Am J Hum Genet       Date:  2015-06-25       Impact factor: 11.025

5.  Guidelines for investigating causality of sequence variants in human disease.

Authors:  D G MacArthur; T A Manolio; D P Dimmock; H L Rehm; J Shendure; G R Abecasis; D R Adams; R B Altman; S E Antonarakis; E A Ashley; J C Barrett; L G Biesecker; D F Conrad; G M Cooper; N J Cox; M J Daly; M B Gerstein; D B Goldstein; J N Hirschhorn; S M Leal; L A Pennacchio; J A Stamatoyannopoulos; S R Sunyaev; D Valle; B F Voight; W Winckler; C Gunter
Journal:  Nature       Date:  2014-04-24       Impact factor: 49.962

6.  The discovery of integrated gene networks for autism and related disorders.

Authors:  Fereydoun Hormozdiari; Osnat Penn; Elhanan Borenstein; Evan E Eichler
Journal:  Genome Res       Date:  2014-11-05       Impact factor: 9.043

7.  Discovery of four recessive developmental disorders using probabilistic genotype and phenotype matching among 4,125 families.

Authors:  Nadia Akawi; Jeremy McRae; Morad Ansari; Meena Balasubramanian; Moira Blyth; Angela F Brady; Stephen Clayton; Trevor Cole; Charu Deshpande; Tomas W Fitzgerald; Nicola Foulds; Richard Francis; George Gabriel; Sebastian S Gerety; Judith Goodship; Emma Hobson; Wendy D Jones; Shelagh Joss; Daniel King; Nikolai Klena; Ajith Kumar; Melissa Lees; Chris Lelliott; Jenny Lord; Dominic McMullan; Mary O'Regan; Deborah Osio; Virginia Piombo; Elena Prigmore; Diana Rajan; Elisabeth Rosser; Alejandro Sifrim; Audrey Smith; Ganesh J Swaminathan; Peter Turnpenny; James Whitworth; Caroline F Wright; Helen V Firth; Jeffrey C Barrett; Cecilia W Lo; David R FitzPatrick; Matthew E Hurles
Journal:  Nat Genet       Date:  2015-10-05       Impact factor: 38.330

8.  MMP21 is mutated in human heterotaxy and is required for normal left-right asymmetry in vertebrates.

Authors:  Anne Guimier; George C Gabriel; Fanny Bajolle; Michael Tsang; Hui Liu; Aaron Noll; Molly Schwartz; Rajae El Malti; Laurie D Smith; Nikolai T Klena; Gina Jimenez; Neil A Miller; Myriam Oufadem; Anne Moreau de Bellaing; Hisato Yagi; Carol J Saunders; Candice N Baker; Sylvie Di Filippo; Kevin A Peterson; Isabelle Thiffault; Christine Bole-Feysot; Linda D Cooley; Emily G Farrow; Cécile Masson; Patric Schoen; Jean-François Deleuze; Patrick Nitschké; Stanislas Lyonnet; Loic de Pontual; Stephen A Murray; Damien Bonnet; Stephen F Kingsmore; Jeanne Amiel; Patrice Bouvagnet; Cecilia W Lo; Christopher T Gordon
Journal:  Nat Genet       Date:  2015-10-05       Impact factor: 38.330

9.  A framework for the interpretation of de novo mutation in human disease.

Authors:  Kaitlin E Samocha; Elise B Robinson; Stephan J Sanders; Christine Stevens; Aniko Sabo; Lauren M McGrath; Jack A Kosmicki; Karola Rehnström; Swapan Mallick; Andrew Kirby; Dennis P Wall; Daniel G MacArthur; Stacey B Gabriel; Mark DePristo; Shaun M Purcell; Aarno Palotie; Eric Boerwinkle; Joseph D Buxbaum; Edwin H Cook; Richard A Gibbs; Gerard D Schellenberg; James S Sutcliffe; Bernie Devlin; Kathryn Roeder; Benjamin M Neale; Mark J Daly
Journal:  Nat Genet       Date:  2014-08-03       Impact factor: 38.330

10.  Large-scale discovery of novel genetic causes of developmental disorders.

Authors: 
Journal:  Nature       Date:  2014-12-24       Impact factor: 69.504

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  7 in total

Review 1.  Concise Review: Induced Pluripotent Stem Cell Research in the Era of Precision Medicine.

Authors:  Takashi Hamazaki; Nihal El Rouby; Natalie C Fredette; Katherine E Santostefano; Naohiro Terada
Journal:  Stem Cells       Date:  2017-02-05       Impact factor: 6.277

2.  Genomic architecture of fetal central nervous system anomalies using whole-genome sequencing.

Authors:  Ying Yang; Sheng Zhao; Guoqiang Sun; Fang Chen; Tongda Zhang; Jieping Song; Wenzhong Yang; Lin Wang; Nianji Zhan; Xiaohong Yang; Xia Zhu; Bin Rao; Zhenzhen Yin; Jing Zhou; Haisheng Yan; Yushan Huang; Jingyu Ye; Hui Huang; Chen Cheng; Shida Zhu; Jian Guo; Xun Xu; Xinlin Chen
Journal:  NPJ Genom Med       Date:  2022-05-13       Impact factor: 6.083

Review 3.  New insights into the generation and role of de novo mutations in health and disease.

Authors:  Rocio Acuna-Hidalgo; Joris A Veltman; Alexander Hoischen
Journal:  Genome Biol       Date:  2016-11-28       Impact factor: 13.583

4.  Energy metabolism and whole-exome sequencing-based analysis of Sasang constitution: a pilot study.

Authors:  Hyoung Kyu Kim; Heetak Lee; Ji Ho So; Seung Hun Jeong; Dae Yun Seo; Jong-Yeol Kim; Sanguk Kim; Jin Han
Journal:  Integr Med Res       Date:  2017-05-26

5.  ABCC9-related Intellectual disability Myopathy Syndrome is a KATP channelopathy with loss-of-function mutations in ABCC9.

Authors:  Marie F Smeland; Conor McClenaghan; Helen I Roessler; Sanne Savelberg; Geir Åsmund Myge Hansen; Helene Hjellnes; Kjell Arne Arntzen; Kai Ivar Müller; Andreas Rosenberger Dybesland; Theresa Harter; Monica Sala-Rabanal; Chris H Emfinger; Yan Huang; Soma S Singareddy; Jamie Gunn; David F Wozniak; Attila Kovacs; Maarten Massink; Federico Tessadori; Sarah M Kamel; Jeroen Bakkers; Maria S Remedi; Marijke Van Ghelue; Colin G Nichols; Gijs van Haaften
Journal:  Nat Commun       Date:  2019-10-01       Impact factor: 14.919

6.  Large-Scale Discovery of Disease-Disease and Disease-Gene Associations.

Authors:  Djordje Gligorijevic; Jelena Stojanovic; Nemanja Djuric; Vladan Radosavljevic; Mihajlo Grbovic; Rob J Kulathinal; Zoran Obradovic
Journal:  Sci Rep       Date:  2016-08-31       Impact factor: 4.379

7.  An online tool for measuring and visualizing phenotype similarities using HPO.

Authors:  Jiajie Peng; Hansheng Xue; Weiwei Hui; Junya Lu; Bolin Chen; Qinghua Jiang; Xuequn Shang; Yadong Wang
Journal:  BMC Genomics       Date:  2018-08-13       Impact factor: 3.969

  7 in total

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