Literature DB >> 26505535

A structural classification of carbohydrate epimerases: From mechanistic insights to practical applications.

Stevie Van Overtveldt1, Tom Verhaeghe1, Henk-Jan Joosten2, Tom van den Bergh2, Koen Beerens1, Tom Desmet1.   

Abstract

In recent years, carbohydrate epimerases have attracted a lot of attention as efficient biocatalysts that can convert abundant sugars (e.g.d-fructose) directly into rare counterparts (e.g.d-psicose). Despite increased research activities, no review about these enzymes has been published in more than a decade, meaning that their full potential is hard to appreciate. Here, we present an overview of all known carbohydrate epimerases based on a classification in structural families, which links every substrate specificity to a well-defined reaction mechanism. The mechanism can even be predicted for enzymes that have not yet been characterized or that lack structural information. In this review, the different families are discussed in detail, both structurally and mechanistically, with special reference to recent examples in the literature. Furthermore, the value of understanding the reaction mechanism will be illustrated by making the link to possible application and engineering targets.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Carbohydrate epimerases; Classification; Engineering opportunities; GalE; Mechanisms; Rare sugar synthesis; Structural family

Mesh:

Substances:

Year:  2015        PMID: 26505535     DOI: 10.1016/j.biotechadv.2015.10.010

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  11 in total

1.  Role of novel polysaccharide layers in assembly of the exosporium, the outermost protein layer of the Bacillus anthracis spore.

Authors:  Dörte Lehmann; Margaret Sladek; Mark Khemmani; Tyler J Boone; Eric Rees; Adam Driks
Journal:  Mol Microbiol       Date:  2022-08-15       Impact factor: 3.979

2.  Semi-rational design and molecular dynamics simulations study of the thermostability enhancement of cellobiose 2-epimerases.

Authors:  Qiuming Chen; Yaqin Xiao; Eugene I Shakhnovich; Wenli Zhang; Wanmeng Mu
Journal:  Int J Biol Macromol       Date:  2019-11-13       Impact factor: 6.953

3.  Spinning sugars in antigen biosynthesis: characterization of the Coxiella burnetii and Streptomyces griseus TDP-sugar epimerases.

Authors:  Alice R Cross; Sumita Roy; Mirella Vivoli Vega; Martin Rejzek; Sergey A Nepogodiev; Matthew Cliff; Debbie Salmon; Michail N Isupov; Robert A Field; Joann L Prior; Nicholas J Harmer
Journal:  J Biol Chem       Date:  2022-04-06       Impact factor: 5.486

4.  Characterization of D-Allulose-3-Epimerase From Ruminiclostridium papyrosolvens and Immobilization Within Metal-Organic Frameworks.

Authors:  Jiaming Yang; Dexun Fan; Fengguang Zhao; Ying Lin; Suiping Zheng; Shuangyan Han
Journal:  Front Bioeng Biotechnol       Date:  2022-04-14

5.  Biochemical analysis and the preliminary crystallographic characterization of D-tagatose 3-epimerase from Rhodobacter sphaeroides.

Authors:  Zhengliang Qi; Zhangliang Zhu; Jian-Wen Wang; Songtao Li; Qianqian Guo; Panpan Xu; Fuping Lu; Hui-Min Qin
Journal:  Microb Cell Fact       Date:  2017-11-09       Impact factor: 5.328

6.  Expanding the Enzyme Repertoire for Sugar Nucleotide Epimerization: The CDP-Tyvelose 2-Epimerase from Thermodesulfatator atlanticus for Glucose/Mannose Interconversion.

Authors:  Christian Rapp; Stevie van Overtveldt; Koen Beerens; Hansjörg Weber; Tom Desmet; Bernd Nidetzky
Journal:  Appl Environ Microbiol       Date:  2020-12-04       Impact factor: 4.792

Review 7.  GDP-Mannose 3,5-Epimerase: A View on Structure, Mechanism, and Industrial Potential.

Authors:  Koen Beerens; Ophelia Gevaert; Tom Desmet
Journal:  Front Mol Biosci       Date:  2022-01-11

8.  Efficient D-allulose synthesis under acidic conditions by auto-inducing expression of the tandem D-allulose 3-epimerase genes in Bacillus subtilis.

Authors:  Mengkai Hu; Yuxia Wei; Rongzhen Zhang; Minglong Shao; Taowei Yang; Meijuan Xu; Xian Zhang; Zhiming Rao
Journal:  Microb Cell Fact       Date:  2022-04-19       Impact factor: 6.352

9.  Converting Galactose into the Rare Sugar Talose with Cellobiose 2-Epimerase as Biocatalyst.

Authors:  Stevie Van Overtveldt; Ophelia Gevaert; Martijn Cherlet; Koen Beerens; Tom Desmet
Journal:  Molecules       Date:  2018-10-01       Impact factor: 4.411

10.  A Novel D-Galacturonate Fermentation Pathway in Lactobacillus suebicus Links Initial Reactions of the Galacturonate-Isomerase Route With the Phosphoketolase Pathway.

Authors:  Laura C Valk; Marijke A H Luttik; C de Ram; Martin Pabst; Marcel van den Broek; Mark C M van Loosdrecht; Jack T Pronk
Journal:  Front Microbiol       Date:  2020-01-17       Impact factor: 5.640

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