Literature DB >> 26497278

Structural and biochemical characterization of two heme binding sites on α1-microglobulin using site directed mutagenesis and molecular simulation.

Sigurbjörg Rutardottir1, Elena Karnaukhova2, Chanin Nantasenamat3, Napat Songtawee4, Virapong Prachayasittikul5, Mohsen Rajabi2, Lena Wester Rosenlöf1, Abdu I Alayash2, Bo Åkerström6.   

Abstract

BACKGROUND: α1-Microglobulin (A1M) is a reductase and radical scavenger involved in physiological protection against oxidative damage. These functions were previously shown to be dependent upon cysteinyl-, C34, and lysyl side-chains, K(92, 118,130). A1M binds heme and the crystal structure suggests that C34 and H123 participate in a heme binding site. We have investigated the involvement of these five residues in the interactions with heme.
METHODS: Four A1M-variants were expressed: with cysteine to serine substitution in position 34, lysine to threonine substitutions in positions (92, 118, 130), histidine to serine substitution in position 123 and a wt without mutations. Heme binding was investigated by tryptophan fluorescence quenching, UV-Vis spectrophotometry, circular dichroism, SPR, electrophoretic migration shift, gel filtration, catalase-like activity and molecular simulation.
RESULTS: All A1M-variants bound to heme. Mutations in C34, H123 or K(92, 118, 130) resulted in significant absorbance changes, CD spectral changes, and catalase-like activity, suggesting involvement of these side-groups in coordination of the heme-iron. Molecular simulation support a model with two heme-binding sites in A1M involving the mutated residues. Binding of the first heme induces allosteric stabilization of the structure predisposing for a better fit of the second heme.
CONCLUSIONS: The results suggest that one heme-binding site is located in the lipocalin pocket and a second binding site between loops 1 and 4. Reactions with the hemes involve the side-groups of C34, K(92, 118, 130) and H123. GENERAL SIGNIFICANCE: The model provides a structural basis for the functional activities of A1M: heme binding activity of A1M.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Heme; Molecular simulation; Site-directed mutagenesis; α(1)-Microglobulin

Mesh:

Substances:

Year:  2015        PMID: 26497278     DOI: 10.1016/j.bbapap.2015.10.002

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  9 in total

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Authors:  Bo Åkerström; Lena Rosenlöf; Anneli Hägerwall; Sigurbjörg Rutardottir; Jonas Ahlstedt; Maria E Johansson; Lena Erlandsson; Maria Allhorn; Magnus Gram
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Authors:  Jesper Bergwik; Bo Åkerström
Journal:  Front Physiol       Date:  2020-04-02       Impact factor: 4.566

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Authors:  Larysa Aleksenko; Bo Åkerström; Eva Hansson; Lena Erlandsson; Stefan R Hansson
Journal:  Sci Rep       Date:  2020-11-26       Impact factor: 4.379

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  9 in total

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