| Literature DB >> 26496789 |
Wei Sun1, Hui Dong2, Yue-Bo Gao3, Qian-Fu Su1, Hai-Tao Qian2, Hong-Yan Bai4, Zhu-Ting Zhang5, Bin Cong6.
Abstract
The nonmigratory grasshopper Oedaleus infernalis Saussure (Orthoptera : Acridoidea) is an agricultural pest to crops and forage grasses over a wide natural geographical distribution in China. The genetic diversity and genetic variation among 10 geographically separated populations of O. infernalis was assessed using polymerase chain reaction-based molecular markers, including the intersimple sequence repeat and mitochondrial cytochrome oxidase sequences. A high level of genetic diversity was detected among these populations from the intersimple sequence repeat (H: 0.2628, I: 0.4129, Hs: 0.2130) and cytochrome oxidase analyses (Hd: 0.653). There was no obvious geographical structure based on an unweighted pair group method analysis and median-joining network. The values of FST, θ(II), and Gst estimated in this study are low, and the gene flow is high (Nm > 4). Analysis of the molecular variance suggested that most of the genetic variation occurs within populations, whereas only a small variation takes place between populations. No significant correlation was found between the genetic distance and geographical distance. Overall, our results suggest that the geographical distance plays an unimpeded role in the gene flow among O. infernalis populations.Entities:
Keywords: COI; ISSR; gene flow; genetic diversity
Mesh:
Substances:
Year: 2015 PMID: 26496789 PMCID: PMC4622177 DOI: 10.1093/jisesa/iev132
Source DB: PubMed Journal: J Insect Sci ISSN: 1536-2442 Impact factor: 1.857
Sampling information on the 10 geographical populations in this study
| Locality name | Abbreviation of locality name | Date | Number of individuals for ISSR | Number of individuals for COI |
|---|---|---|---|---|
| Faku, Liaoning | FK | August 2011 | 15 | 15 |
| Beipiao, Liaoning | BP | October 2011 | 15 | 13 |
| Nong’an, Jilin | NA | August 2011 | 15 | 15 |
| Tongliao, Inner Mongolia | TL | August 2011 | 15 | 15 |
| Gerichaolu, Inner Mongolia | GR | August 2011 | 15 | 15 |
| Xilinhaote, Inner Mongolia | XL | September 2011 | 15 | 13 |
| Cangzhou, Hebei | CZ | September 2011 | 15 | 15 |
| Helan, Ningxia | HL | September 2011 | 15 | 14 |
| Qingxu, Shanxi | QX | September 2011 | 15 | 15 |
| Wuqi, Shaanxi | WQ | September 2011 | 15 | 14 |
Fig. 1.Sample location of O. infernalis in China.
Primers for ISSR analysis
| Primer name | Sequence (5′–3′) | Annealing temperature (°C) | No. of bands scored | No. of polymorphic bands | PPB (%) |
|---|---|---|---|---|---|
| UBC 809 | (AG)8G | 49 | 10 | 10 | 100 |
| UBC 812 | (GA)8A | 47 | 9 | 8 | 88.9 |
| UBC 815 | (CT)8G | 49 | 10 | 10 | 100 |
| UBC 823 | (TC)8C | 49 | 9 | 9 | 100 |
| UBC 840 | (GA)8YT | 49 | 10 | 10 | 100 |
| UBC 843 | (CT)8RA | 49 | 9 | 6 | 66.7 |
| UBC 844 | (CT)8RC | 51 | 13 | 13 | 100 |
| UBC 845 | (CT)8RG | 51 | 9 | 8 | 88.9 |
| UBC 848 | (CA)8RG | 51 | 8 | 8 | 100 |
| UBC 854 | (TC)8RG | 51 | 6 | 6 | 100 |
| UBC 866 | (CTC)6 | 56 | 10 | 10 | 100 |
| UBC 900 | ACT TCC CCA CAG GTT AAC ACA | 53 | 8 | 8 | 100 |
| Total | — | 111 | 106 | 95.5 |
R = (A, G); Y = (C, T).
Genetic variation statistics among populations
| Population | No. of polymorphic bands | PPB (%) | |||||
|---|---|---|---|---|---|---|---|
| BP | 1.7027 ± 0.4591 | 1.4342 ± 0.3553 | 78 | 70.27 | 0.2550 ± 0.1962 | 0.3787 ± 0.2790 | 0.2174 ± 0.0152 |
| CZ | 1.7117 ± 0.4550 | 1.4372 ± 0.3565 | 79 | 71.17 | 0.2563 ± 0.1966 | 0.3805 ± 0.2790 | 0.2138 ± 0.0150 |
| NA | 1.6396 ± 0.4823 | 1.3664 ± 0.3578 | 71 | 63.96 | 0.2171 ± 0.1983 | 0.3257 ± 0.2827 | 0.2122 ± 0.0146 |
| GR | 1.6396 ± 0.4823 | 1.4015 ± 0.3570 | 71 | 63.96 | 0.2364 ± 0.1998 | 0.3508 ± 0.2867 | 0.2141 ± 0.0149 |
| HL | 1.6577 ± 0.4766 | 1.3782 ± 0.3454 | 73 | 65.77 | 0.2261 ± 0.1957 | 0.3390 ± 0.2805 | 0.2065 ± 0.0153 |
| FK | 1.6757 ± 0.4702 | 1.3850 ± 0.3355 | 75 | 67.57 | 0.2321 ± 0.1920 | 0.3487 ± 0.2759 | 0.2090 ± 0.0150 |
| QX | 1.6396 ± 0.4823 | 1.4117 ± 0.3629 | 71 | 63.96 | 0.2405 ± 0.2020 | 0.3555 ± 0.2896 | 0.2110 ± 0.0158 |
| TL | 1.6216 ± 0.4872 | 1.3829 ± 0.3570 | 69 | 62.16 | 0.2261 ± 0.1999 | 0.3364 ± 0.2872 | 0.2154 ± 0.0149 |
| XL | 1.6396 ± 0.4823 | 1.4208 ± 0.3838 | 71 | 63.96 | 0.2408 ± 0.2086 | 0.3538 ± 0.2960 | 0.2150 ± 0.0151 |
| WQ | 1.6486 ± 0.4796 | 1.3991 ± 0.3465 | 72 | 64.86 | 0.2372 ± 0.1971 | 0.3527 ± 0.2842 | 0.2161 ± 0.0146 |
| Total | 1.9550 ± 0.2083 | 1.4066 ± 0.2636 | 111 | 95.5 | 0.2628 ± 0.1432 | 0.4129 ± 0.1933 | 0.2130 ± 0.0135 |
Na, genetic parameter of observed number of alleles; Ne: effective number of alleles; H: Nei’s gene diversity; I: Shannon information index. Hs: genetic diversity using a Bayesian approach.
Genetic similarity (below the diagonal) and genetic distance (above the diagonal) among populations
| Population | BP | CZ | NA | GR | HL | FK | QX | TL | XL | WQ |
|---|---|---|---|---|---|---|---|---|---|---|
| BP | — | 0.0222 | 0.0452 | 0.0400 | 0.0373 | 0.0405 | 0.0309 | 0.0468 | 0.0313 | 0.0298 |
| CZ | 0.9780 | — | 0.0357 | 0.0328 | 0.0349 | 0.0375 | 0.0229 | 0.0440 | 0.0300 | 0.0302 |
| NA | 0.9558 | 0.9649 | — | 0.0551 | 0.0525 | 0.0447 | 0.0430 | 0.0517 | 0.0515 | 0.0301 |
| GR | 0.9608 | 0.9677 | 0.9464 | — | 0.0442 | 0.0239 | 0.0422 | 0.0452 | 0.0343 | 0.0418 |
| HL | 0.9634 | 0.9657 | 0.9488 | 0.9568 | — | 0.0374 | 0.0366 | 0.0393 | 0.0423 | 0.0354 |
| FK | 0.9603 | 0.9632 | 0.9563 | 0.9764 | 0.9633 | — | 0.0429 | 0.0372 | 0.0357 | 0.0340 |
| QX | 0.9696 | 0.9774 | 0.9579 | 0.9587 | 0.9641 | 0.9580 | — | 0.0329 | 0.0445 | 0.0363 |
| TL | 0.9543 | 0.9569 | 0.9496 | 0.9558 | 0.9615 | 0.9635 | 0.9676 | — | 0.0628 | 0.0359 |
| XL | 0.9692 | 0.9704 | 0.9498 | 0.9663 | 0.9586 | 0.9650 | 0.9564 | 0.9392 | — | 0.0283 |
| WQ | 0.9706 | 0.9703 | 0.9703 | 0.9591 | 0.9653 | 0.9666 | 0.9644 | 0.9648 | 0.9721 | — |
Fig. 2.UPGMA dendrogram for the 10 populations of O. infernalis.
Fig. 3.Mantel test between geographical distance and genetic distance among different populations of O. infernalis based on ISSR data.
Fig. 4.Median-joining haplotype network of O. infernalis based on COI gene of mtDNA. The circle areas are proportional to haplotypes frequencies, while the color portions represent the proportions of the same haplotype occurring in each sampling region.
COI haplotype diversity and nucleotide diversity in different geographic populations of O. infernalis
| Population | Number of haplotypes ( | Haplotype Diversity ( | Nucleotide diversity ( | Average number of nucleotide differences ( |
|---|---|---|---|---|
| BP | 4 | 0.423 ± 0.164 | 0.0043 ± 0.0023 | 1.3333 |
| CZ | 5 | 0.733 ± 0.089 | 0.0030 ± 0.0006 | 0.9333 |
| NA | 5 | 0.752 ± 0.076 | 0.0037 ± 0.0007 | 1.1428 |
| GR | 8 | 0.790 ± 0.105 | 0.0055 ± 0.0011 | 1.6952 |
| HL | 4 | 0.491 ± 0.175 | 0.0017 ± 0.0007 | 0.5454 |
| FK | 6 | 0.758 ± 0.079 | 0.0035 ± 0.0006 | 1.0719 |
| QX | 5 | 0.562 ± 0.143 | 0.0035 ± 0.0011 | 1.0666 |
| TL | 4 | 0.543 ± 0.133 | 0.0028 ± 0.0010 | 0.8571 |
| XL | 4 | 0.423 ± 0.164 | 0.0020 ± 0.0009 | 0.6153 |
| WQ | 4 | 0.648 ± 0.116 | 0.0037 ± 0.0008 | 1.1318 |
| Total population | 21 | 0.653 ± 0.044 | 0.0036 ± 0.0004 | 1.1097 |
Fig. 5.Mantel test between geographical distance and genetic distance among different populations of O. infernalis based on the COI gene.