Literature DB >> 26495045

Investigating Dynamic Interdomain Allostery in Pin1.

Jeffrey W Peng1.   

Abstract

Signaling proteins often sequester complementary functional sites in separate domains. How do the different domains communicate with one another? An attractive system to address this question is the mitotic regulator, human Pin1 (Lu et al. 1996). Pin-1 consists of two tethered domains: a WW domain for substrate binding, and a catalytic domain for peptidyl-prolyl isomerase (PPIase) activity. Pin1 accelerates the cis-trans isomerization of phospho-Ser/Thr-Pro (pS/T-P) motifs within proteins regulating the cell cycle and neuronal development. The early x-ray (Ranganathan et al. 1997; Verdecia et al. 2000) and solution NMR studies (Bayer et al. 2003; Jacobs et al. 2003) of Pin1 indicated inter- and intradomain motion. We became interested in exploring how such motions might affect interdomain communication, using NMR. Our accumulated results indicate substrate binding to Pin1 WW domain changes the intra/inter domain mobility, thereby altering substrate activity in the distal PPIase domain catalytic site. Thus, Pin1 shows evidence of dynamic allostery, in the sense of Cooper and Dryden (Cooper and Dryden 1984). We highlight our results supporting this conclusion, and summarize them via a simple speculative model of conformational selection.

Entities:  

Keywords:  IDR; NMR; PPIase; Pin1; WW domain; allostery; correlated motion; protein dynamics

Year:  2015        PMID: 26495045      PMCID: PMC4610412          DOI: 10.1007/s12551-015-0171-9

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  64 in total

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Authors:  Tatyana I Igumenova; Kendra King Frederick; A Joshua Wand
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

2.  Sequence-specific dynamics modulate recognition specificity in WW domains.

Authors:  Tao Peng; John S Zintsmaster; Andrew T Namanja; Jeffrey W Peng
Journal:  Nat Struct Mol Biol       Date:  2007-03-04       Impact factor: 15.369

Review 3.  A decade of fragment-based drug design: strategic advances and lessons learned.

Authors:  Philip J Hajduk; Jonathan Greer
Journal:  Nat Rev Drug Discov       Date:  2007-02-09       Impact factor: 84.694

4.  Allostery in protein domains reflects a balance of steric and hydrophobic effects.

Authors:  Jeremy L England
Journal:  Structure       Date:  2011-07-13       Impact factor: 5.006

5.  Allostery without conformational change. A plausible model.

Authors:  A Cooper; D T Dryden
Journal:  Eur Biophys J       Date:  1984       Impact factor: 1.733

6.  Dynamics of methyl groups in proteins as studied by proton-detected 13C NMR spectroscopy. Application to the leucine residues of staphylococcal nuclease.

Authors:  L K Nicholson; L E Kay; D M Baldisseri; J Arango; P E Young; A Bax; D A Torchia
Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

7.  Modeling conformational ensembles of slow functional motions in Pin1-WW.

Authors:  Faruck Morcos; Santanu Chatterjee; Christopher L McClendon; Paul R Brenner; Roberto López-Rendón; John Zintsmaster; Maria Ercsey-Ravasz; Christopher R Sweet; Matthew P Jacobson; Jeffrey W Peng; Jesús A Izaguirre
Journal:  PLoS Comput Biol       Date:  2010-12-02       Impact factor: 4.475

8.  The prolyl isomerase Pin1 regulates amyloid precursor protein processing and amyloid-beta production.

Authors:  Lucia Pastorino; Anyang Sun; Pei-Jung Lu; Xiao Zhen Zhou; Martin Balastik; Greg Finn; Gerburg Wulf; Jormay Lim; Shi-Hua Li; Xiaojiang Li; Weiming Xia; Linda K Nicholson; Kun Ping Lu
Journal:  Nature       Date:  2006-03-23       Impact factor: 49.962

9.  Allosteric communication in the KIX domain proceeds through dynamic repacking of the hydrophobic core.

Authors:  Sven Brüschweiler; Robert Konrat; Martin Tollinger
Journal:  ACS Chem Biol       Date:  2013-05-20       Impact factor: 5.100

10.  Pin1 promotes GR transactivation by enhancing recruitment to target genes.

Authors:  Toryn M Poolman; Stuart N Farrow; Laura Matthews; Andrew S Loudon; David W Ray
Journal:  Nucleic Acids Res       Date:  2013-07-25       Impact factor: 16.971

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  20 in total

1.  Molecular Mechanism of the Pin1-Histone H1 Interaction.

Authors:  Dinusha Jinasena; Robert Simmons; Hawa Gyamfi; Nicholas C Fitzkee
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

2.  Hinge-Shift Mechanism Modulates Allosteric Regulations in Human Pin1.

Authors:  Paul Campitelli; Jingjing Guo; Huan-Xiang Zhou; S Banu Ozkan
Journal:  J Phys Chem B       Date:  2018-02-07       Impact factor: 2.991

3.  On the use of residual dipolar couplings in multi-state structure calculation of two-domain proteins.

Authors:  Alexandra Born; Morkos A Henen; Parker J Nichols; Beat Vögeli
Journal:  Magn Reson Lett       Date:  2021-11-02

4.  Atomic resolution protein allostery from the multi-state structure of a PDZ domain.

Authors:  Dzmitry Ashkinadze; Harindranath Kadavath; Aditya Pokharna; Celestine N Chi; Michael Friedmann; Dean Strotz; Pratibha Kumari; Martina Minges; Riccardo Cadalbert; Stefan Königl; Peter Güntert; Beat Vögeli; Roland Riek
Journal:  Nat Commun       Date:  2022-10-20       Impact factor: 17.694

5.  Pre-Anchoring of Pin1 to Unphosphorylated c-Myc in a Fuzzy Complex Regulates c-Myc Activity.

Authors:  Sara Helander; Meri Montecchio; Robert Pilstål; Yulong Su; Jacob Kuruvilla; Malin Elvén; Javed M E Ziauddin; Madhanagopal Anandapadamanaban; Susana Cristobal; Patrik Lundström; Rosalie C Sears; Björn Wallner; Maria Sunnerhagen
Journal:  Structure       Date:  2015-11-19       Impact factor: 5.006

6.  Enhanced Sampling of Interdomain Motion Using Map-Restrained Langevin Dynamics and NMR: Application to Pin1.

Authors:  Jill J Bouchard; Junchao Xia; David A Case; Jeffrey W Peng
Journal:  J Mol Biol       Date:  2018-05-16       Impact factor: 5.469

7.  Reconstruction of Coupled Intra- and Interdomain Protein Motion from Nuclear and Electron Magnetic Resonance.

Authors:  Alexandra Born; Janne Soetbeer; Frauke Breitgoff; Morkos A Henen; Nikolaos Sgourakis; Yevhen Polyhach; Parker J Nichols; Dean Strotz; Gunnar Jeschke; Beat Vögeli
Journal:  J Am Chem Soc       Date:  2021-09-27       Impact factor: 16.383

8.  Protein Allostery at Atomic Resolution.

Authors:  Dean Strotz; Julien Orts; Harindranath Kadavath; Michael Friedmann; Dhiman Ghosh; Simon Olsson; Celestine N Chi; Aditya Pokharna; Peter Güntert; Beat Vögeli; Roland Riek
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-30       Impact factor: 16.823

9.  Regulation of the Human Phosphatase PTPN4 by the inter-domain linker connecting the PDZ and the phosphatase domains.

Authors:  Célia Caillet-Saguy; Angelo Toto; Raphael Guerois; Pierre Maisonneuve; Eva di Silvio; Kristi Sawyer; Stefano Gianni; Nicolas Wolff
Journal:  Sci Rep       Date:  2017-08-11       Impact factor: 4.379

10.  Backbone and side-chain chemical shift assignments of full-length, apo, human Pin1, a phosphoprotein regulator with interdomain allostery.

Authors:  Alexandra Born; Parker J Nichols; Morkos A Henen; Celestine N Chi; Dean Strotz; Peter Bayer; Shin-Ichi Tate; Jeffrey W Peng; Beat Vögeli
Journal:  Biomol NMR Assign       Date:  2018-10-23       Impact factor: 0.731

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