Literature DB >> 26493068

Epigenetics mechanisms in renal development.

Sylvia A Hilliard1, Samir S El-Dahr2.   

Abstract

Appreciation for the role of epigenetic modifications in the diagnosis and treatment of diseases is fast gaining attention. Treatment of chronic kidney disease stemming from diabetes or hypertension as well as Wilms tumor will all profit from knowledge of the changes in the epigenomic landscapes. To do so, it is essential to characterize the epigenomic modifiers and their modifications under normal physiological conditions. The transcription factor Pax2 was identified as a major epigenetic player in the early specification of the kidney. Notably, the progenitors of all nephrons that reside in the cap mesenchyme display a unique bivalent histone signature (expressing repressive epigenetic marks alongside activation marks) on lineage-specific genes. These cells are deemed poised for differentiation and commitment to the nephrogenic lineage. In response to the appropriate inducing signal, these genes lose their repressive histone marks, which allow for their expression in nascent nephron precursors. Such knowledge of the epigenetic landscape and the resultant cell fate or behavior in the developing kidney will greatly improve the overall success in designing regenerative strategies and tissue reprogramming methodologies from pluripotent cells.

Entities:  

Keywords:  Epigenetics; Histone code; Kidney development; Nephrogenesis; Nephron progenitors

Mesh:

Year:  2015        PMID: 26493068      PMCID: PMC4841758          DOI: 10.1007/s00467-015-3228-x

Source DB:  PubMed          Journal:  Pediatr Nephrol        ISSN: 0931-041X            Impact factor:   3.714


  48 in total

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Authors:  Nathan McLaughlin; Fenglin Wang; Zubaida Saifudeen; Samir S El-Dahr
Journal:  Epigenetics       Date:  2013-10-29       Impact factor: 4.528

Review 2.  X-inactivation, imprinting, and long noncoding RNAs in health and disease.

Authors:  Jeannie T Lee; Marisa S Bartolomei
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

Review 3.  Covalent histone modifications--miswritten, misinterpreted and mis-erased in human cancers.

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Journal:  Nat Rev Cancer       Date:  2010-07       Impact factor: 60.716

4.  Inhibition of histone deacetylase expands the renal progenitor cell population.

Authors:  Eric D de Groh; Lisa M Swanhart; Chiara Cianciolo Cosentino; Rachel L Jackson; Weixiang Dai; Carolyn A Kitchens; Billy W Day; Thomas E Smithgall; Neil A Hukriede
Journal:  J Am Soc Nephrol       Date:  2010-04-08       Impact factor: 10.121

5.  Wilms tumor chromatin profiles highlight stem cell properties and a renal developmental network.

Authors:  Aviva Presser Aiden; Miguel N Rivera; Esther Rheinbay; Manching Ku; Erik J Coffman; Thanh T Truong; Sara O Vargas; Eric S Lander; Daniel A Haber; Bradley E Bernstein
Journal:  Cell Stem Cell       Date:  2010-06-04       Impact factor: 24.633

6.  Distinct dynamics and distribution of histone methyl-lysine derivatives in mouse development.

Authors:  Vincent L Biron; Kirk J McManus; Ninghe Hu; Michael J Hendzel; D Alan Underhill
Journal:  Dev Biol       Date:  2004-12-15       Impact factor: 3.582

7.  Genome-wide chromatin state transitions associated with developmental and environmental cues.

Authors:  Jiang Zhu; Mazhar Adli; James Y Zou; Griet Verstappen; Michael Coyne; Xiaolan Zhang; Timothy Durham; Mohammad Miri; Vikram Deshpande; Philip L De Jager; David A Bennett; Joseph A Houmard; Deborah M Muoio; Tamer T Onder; Ray Camahort; Chad A Cowan; Alexander Meissner; Charles B Epstein; Noam Shoresh; Bradley E Bernstein
Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

8.  Architecture of the human regulatory network derived from ENCODE data.

Authors:  Mark B Gerstein; Anshul Kundaje; Manoj Hariharan; Stephen G Landt; Koon-Kiu Yan; Chao Cheng; Xinmeng Jasmine Mu; Ekta Khurana; Joel Rozowsky; Roger Alexander; Renqiang Min; Pedro Alves; Alexej Abyzov; Nick Addleman; Nitin Bhardwaj; Alan P Boyle; Philip Cayting; Alexandra Charos; David Z Chen; Yong Cheng; Declan Clarke; Catharine Eastman; Ghia Euskirchen; Seth Frietze; Yao Fu; Jason Gertz; Fabian Grubert; Arif Harmanci; Preti Jain; Maya Kasowski; Phil Lacroute; Jing Jane Leng; Jin Lian; Hannah Monahan; Henriette O'Geen; Zhengqing Ouyang; E Christopher Partridge; Dorrelyn Patacsil; Florencia Pauli; Debasish Raha; Lucia Ramirez; Timothy E Reddy; Brian Reed; Minyi Shi; Teri Slifer; Jing Wang; Linfeng Wu; Xinqiong Yang; Kevin Y Yip; Gili Zilberman-Schapira; Serafim Batzoglou; Arend Sidow; Peggy J Farnham; Richard M Myers; Sherman M Weissman; Michael Snyder
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

9.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

10.  Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells.

Authors:  Bo Wen; Hao Wu; Yoichi Shinkai; Rafael A Irizarry; Andrew P Feinberg
Journal:  Nat Genet       Date:  2009-01-18       Impact factor: 38.330

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  9 in total

Review 1.  Evolution, kidney development, and chronic kidney disease.

Authors:  Robert L Chevalier
Journal:  Semin Cell Dev Biol       Date:  2018-06-05       Impact factor: 7.727

2.  Hydrogen sulfide alleviates hypertensive kidney dysfunction through an epigenetic mechanism.

Authors:  Gregory J Weber; Sathnur B Pushpakumar; Utpal Sen
Journal:  Am J Physiol Heart Circ Physiol       Date:  2017-02-17       Impact factor: 4.733

Review 3.  Renal development in the fetus and premature infant.

Authors:  Stacy Rosenblum; Abhijeet Pal; Kimberly Reidy
Journal:  Semin Fetal Neonatal Med       Date:  2017-02-01       Impact factor: 3.926

Review 4.  Current Epigenetic Insights in Kidney Development.

Authors:  Katrina Chan; Xiaogang Li
Journal:  Genes (Basel)       Date:  2021-08-21       Impact factor: 4.141

5.  Towards adulthood with a solitary kidney.

Authors:  Pierre Cochat; Olivia Febvey; Justine Bacchetta; Etienne Bérard; Natalia Cabrera; Laurence Dubourg
Journal:  Pediatr Nephrol       Date:  2018-10-01       Impact factor: 3.714

6.  Evolutionary Nephrology.

Authors:  Robert L Chevalier
Journal:  Kidney Int Rep       Date:  2017-01-31

7.  Fetal first trimester growth is not associated with kidney outcomes in childhood.

Authors:  Hanneke Bakker; Romy Gaillard; Albert Hofman; Irwin K Reiss; Eric A P Steegers; Vincent W V Jaddoe
Journal:  Pediatr Nephrol       Date:  2016-10-27       Impact factor: 3.714

Review 8.  Concepts for a therapeutic prolongation of nephrogenesis in preterm and low-birth-weight babies must correspond to structural-functional properties in the nephrogenic zone.

Authors:  Will W Minuth
Journal:  Mol Cell Pediatr       Date:  2017-12-07

Review 9.  Modeling epigenetic modifications in renal development and disease with organoids and genome editing.

Authors:  Carmen Hurtado Del Pozo; Elena Garreta; Juan Carlos Izpisúa Belmonte; Nuria Montserrat
Journal:  Dis Model Mech       Date:  2018-11-20       Impact factor: 5.758

  9 in total

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