Literature DB >> 26491976

Genomic and Proteomic Characterization of Acute Kidney Injury.

Prasad Devarajan1.   

Abstract

The incidence and severity of acute kidney injury (AKI) is rising globally, and the associated morbidity and mortality remain high despite promising advances in experimental therapeutics. The reasons include (a) an incomplete understanding of the complex pathophysiology, (b) an inability to reliably identify risk factors for AKI and (c) a lack of biomarkers for the early prediction of AKI and its outcomes. Functional genomics, bioinformatics and proteomics have begun to uncover candidates that are emerging as biomarkers and therapeutic targets. This review will update the reader on current technologies in genomics (including targeted sequencing, genome wide association studies and transcriptome profiling) and proteomics (including gel electrophoresis and mass spectrometry methods) and their application on human AKI.
© 2015 S. Karger AG, Basel.

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Year:  2015        PMID: 26491976      PMCID: PMC5650729          DOI: 10.1159/000437237

Source DB:  PubMed          Journal:  Nephron        ISSN: 1660-8151            Impact factor:   2.847


  16 in total

1.  Early prediction of acute renal injury using urinary proteomics.

Authors:  Mai T Nguyen; Gary F Ross; Catherine L Dent; Prasad Devarajan
Journal:  Am J Nephrol       Date:  2005-06-16       Impact factor: 3.754

2.  Neutrophil gelatinase-associated lipocalin (NGAL) as a biomarker for acute renal injury after cardiac surgery.

Authors:  Jaya Mishra; Catherine Dent; Ridwan Tarabishi; Mark M Mitsnefes; Qing Ma; Caitlin Kelly; Stacey M Ruff; Kamyar Zahedi; Mingyuan Shao; Judy Bean; Kiyoshi Mori; Jonathan Barasch; Prasad Devarajan
Journal:  Lancet       Date:  2005 Apr 2-8       Impact factor: 79.321

3.  Proteomic identification of early biomarkers of acute kidney injury after cardiac surgery in children.

Authors:  Prasad Devarajan; Catherine D Krawczeski; Mai T Nguyen; Thelma Kathman; Zhu Wang; Chirag R Parikh
Journal:  Am J Kidney Dis       Date:  2010-10       Impact factor: 8.860

4.  Exosomal Fetuin-A identified by proteomics: a novel urinary biomarker for detecting acute kidney injury.

Authors:  H Zhou; T Pisitkun; A Aponte; P S T Yuen; J D Hoffert; H Yasuda; X Hu; L Chawla; R-F Shen; M A Knepper; R A Star
Journal:  Kidney Int       Date:  2006-10-04       Impact factor: 10.612

5.  Mass spectrometry-based proteomic analysis of urine in acute kidney injury following cardiopulmonary bypass: a nested case-control study.

Authors:  Julie Ho; Malcolm Lucy; Oleg Krokhin; Kent Hayglass; Edward Pascoe; Gayle Darroch; David Rush; Peter Nickerson; Claudio Rigatto; Martina Reslerova
Journal:  Am J Kidney Dis       Date:  2008-12-13       Impact factor: 8.860

Review 6.  Searching for genes that matter in acute kidney injury: a systematic review.

Authors:  Jonathan C T Lu; Steven G Coca; Uptal D Patel; Lloyd Cantley; Chirag R Parikh
Journal:  Clin J Am Soc Nephrol       Date:  2009-05-14       Impact factor: 8.237

Review 7.  Neutrophil gelatinase-associated lipocalin as a biomarker of acute kidney injury: a critical evaluation of current status.

Authors:  Anja Haase-Fielitz; Michael Haase; Prasad Devarajan
Journal:  Ann Clin Biochem       Date:  2014-02-11       Impact factor: 2.057

Review 8.  Therapeutic translation in acute kidney injury: the epithelial/endothelial axis.

Authors:  Bruce A Molitoris
Journal:  J Clin Invest       Date:  2014-06-02       Impact factor: 14.808

9.  Meta-analysis of molecular response of kidney to ischemia reperfusion injury for the identification of new candidate genes.

Authors:  Dmitry N Grigoryev; Dilyara I Cheranova; Daniel P Heruth; Peixin Huang; Li Q Zhang; Hamid Rabb; Shui Q Ye
Journal:  BMC Nephrol       Date:  2013-10-24       Impact factor: 2.388

10.  Genome-wide association study of kidney function decline in individuals of European descent.

Authors:  Mathias Gorski; Adrienne Tin; Maija Garnaas; Gearoid M McMahon; Audrey Y Chu; Bamidele O Tayo; Cristian Pattaro; Alexander Teumer; Daniel I Chasman; John Chalmers; Pavel Hamet; Johanne Tremblay; Marc Woodward; Thor Aspelund; Gudny Eiriksdottir; Vilmundur Gudnason; Tamara B Harris; Lenore J Launer; Albert V Smith; Braxton D Mitchell; Jeffrey R O'Connell; Alan R Shuldiner; Josef Coresh; Man Li; Paul Freudenberger; Edith Hofer; Helena Schmidt; Reinhold Schmidt; Elizabeth G Holliday; Paul Mitchell; Jie Jin Wang; Ian H de Boer; Guo Li; David S Siscovick; Zoltan Kutalik; Tanguy Corre; Peter Vollenweider; Gérard Waeber; Jayanta Gupta; Peter A Kanetsky; Shih-Jen Hwang; Matthias Olden; Qiong Yang; Mariza de Andrade; Elizabeth J Atkinson; Sharon L R Kardia; Stephen T Turner; Jeanette M Stafford; Jingzhong Ding; Yongmei Liu; Cristina Barlassina; Daniele Cusi; Erika Salvi; Jan A Staessen; Paul M Ridker; Harald Grallert; Christa Meisinger; Martina Müller-Nurasyid; Bernhard K Krämer; Holly Kramer; Sylvia E Rosas; Ilja M Nolte; Brenda W Penninx; Harold Snieder; M Fabiola Del Greco; Andre Franke; Ute Nöthlings; Wolfgang Lieb; Stephan J L Bakker; Ron T Gansevoort; Pim van der Harst; Abbas Dehghan; Oscar H Franco; Albert Hofman; Fernando Rivadeneira; Sanaz Sedaghat; André G Uitterlinden; Stefan Coassin; Margot Haun; Barbara Kollerits; Florian Kronenberg; Bernhard Paulweber; Nicole Aumann; Karlhans Endlich; Mike Pietzner; Uwe Völker; Rainer Rettig; Vincent Chouraki; Catherine Helmer; Jean-Charles Lambert; Marie Metzger; Benedicte Stengel; Terho Lehtimäki; Leo-Pekka Lyytikäinen; Olli Raitakari; Andrew Johnson; Afshin Parsa; Murielle Bochud; Iris M Heid; Wolfram Goessling; Anna Köttgen; W H Linda Kao; Caroline S Fox; Carsten A Böger
Journal:  Kidney Int       Date:  2014-12-10       Impact factor: 10.612

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  10 in total

Review 1.  Biomarkers for the Early Detection and Prognosis of Acute Kidney Injury.

Authors:  Rakesh Malhotra; Edward D Siew
Journal:  Clin J Am Soc Nephrol       Date:  2016-11-08       Impact factor: 8.237

2.  Urinary biomarkers of cell cycle arrest are delayed predictors of acute kidney injury after pediatric cardiopulmonary bypass.

Authors:  Liqun Dong; Qing Ma; Michael Bennett; Prasad Devarajan
Journal:  Pediatr Nephrol       Date:  2017-07-28       Impact factor: 3.714

3.  Amelioration of cisplatin-induced acute kidney injury by recombinant neutrophil gelatinase-associated lipocalin.

Authors:  Qing Ma; Shiva R Devarajan; Prasad Devarajan
Journal:  Ren Fail       Date:  2016-09-08       Impact factor: 2.606

Review 4.  Proteomic profiling of urine: implications for lupus nephritis.

Authors:  Najla Aljaberi; Michael Bennett; Hermine I Brunner; Prasad Devarajan
Journal:  Expert Rev Proteomics       Date:  2019-03-18       Impact factor: 3.940

5.  Acute kidney injury: Acute kidney injury: still misunderstood and misdiagnosed.

Authors:  Prasad Devarajan
Journal:  Nat Rev Nephrol       Date:  2017-02-06       Impact factor: 28.314

6.  Early detection of acute kidney injury after pediatric cardiac surgery.

Authors:  John Lynn Jefferies; Prasad Devarajan
Journal:  Prog Pediatr Cardiol       Date:  2016-06

Review 7.  The Current State of the Art in Acute Kidney Injury.

Authors:  Prasad Devarajan
Journal:  Front Pediatr       Date:  2020-03-17       Impact factor: 3.418

8.  A clinical, proteomics, and artificial intelligence-driven model to predict acute kidney injury in patients undergoing coronary angiography.

Authors:  Nasrien E Ibrahim; Cian P McCarthy; Shreya Shrestha; Hanna K Gaggin; Renata Mukai; Craig A Magaret; Rhonda F Rhyne; James L Januzzi
Journal:  Clin Cardiol       Date:  2019-01-08       Impact factor: 2.882

Review 9.  Dynamic Biomarker Assessment: A Diagnostic Paradigm to Match the AKI Syndrome.

Authors:  Rajit K Basu
Journal:  Front Pediatr       Date:  2020-01-21       Impact factor: 3.418

Review 10.  Pediatric acute kidney injury: prevalence, impact and management challenges.

Authors:  Eileen Ciccia; Prasad Devarajan
Journal:  Int J Nephrol Renovasc Dis       Date:  2017-03-29
  10 in total

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