Literature DB >> 26483019

Translation Analysis at the Genome Scale by Ribosome Profiling.

Agnès Baudin-Baillieu1, Isabelle Hatin1, Rachel Legendre1, Olivier Namy2.   

Abstract

Ribosome profiling is an emerging approach using deep sequencing of the mRNA part protected by the ribosome to study protein synthesis at the genome scale. This approach provides new insights into gene regulation at the translational level. In this review we describe the protocol to prepare polysomes and extract ribosome protected fragments before to deep sequence them.

Keywords:  Recoding; Ribo-seq; Ribosome profiling; Translation regulation

Mesh：

Substances：

Year:  2016        PMID： 26483019     DOI： 10.1007/978-1-4939-3079-1_7

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  6 in total

1.  The translational landscape of Arabidopsis mitochondria.

Authors:  Noelya Planchard; Pierre Bertin; Martine Quadrado; Céline Dargel-Graffin; Isabelle Hatin; Olivier Namy; Hakim Mireau
Journal:  Nucleic Acids Res       Date:  2018-07-06       Impact factor: 16.971

2.  Turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations.

Authors:  Éléonore Durand; Isabelle Gagnon-Arsenault; Johan Hallin; Isabelle Hatin; Alexandre K Dubé; Lou Nielly-Thibault; Olivier Namy; Christian R Landry
Journal:  Genome Res       Date:  2019-05-31       Impact factor: 9.043

3.  Divergent effects of translation termination factor eRF3A and nonsense-mediated mRNA decay factor UPF1 on the expression of uORF carrying mRNAs and ribosome protein genes.

Authors:  Affaf Aliouat; Isabelle Hatin; Pierre Bertin; Pauline François; Vérène Stierlé; Olivier Namy; Samia Salhi; Olivier Jean-Jean
Journal:  RNA Biol       Date:  2019-10-17       Impact factor: 4.652

4.  GWIPS-viz: 2018 update.

Authors:  Audrey M Michel; Stephen J Kiniry; Patrick B F O'Connor; James P Mullan; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

5.  Global translational impacts of the loss of the tRNA modification t6A in yeast.

Authors:  Patrick C Thiaville; Rachel Legendre; Diego Rojas-Benítez; Agnès Baudin-Baillieu; Isabelle Hatin; Guilhem Chalancon; Alvaro Glavic; Olivier Namy; Valérie de Crécy-Lagard
Journal:  Microb Cell       Date:  2016-01-01

6.  The m6A writers regulated by the IL-6/STAT3 inflammatory pathway facilitate cancer cell stemness in cholangiocarcinoma.

Authors:  Hua Ye; Tianqi Chen; Zhancheng Zeng; Bo He; Qianqian Yang; Qi Pan; Yueqin Chen; Wentao Wang
Journal:  Cancer Biol Med       Date:  2021-08-04       Impact factor: 4.248
  6 in total

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