Literature DB >> 26482958

Dynamic Quantitative Trait Locus Analysis of Plant Phenomic Data.

Zitong Li1, Mikko J Sillanpää2.   

Abstract

Advanced platforms have recently become available for automatic and systematic quantification of plant growth and development. These new techniques can efficiently produce multiple measurements of phenotypes over time, and introduce time as an extra dimension to quantitative trait locus (QTL) studies. Functional mapping utilizes a class of statistical models for identifying QTLs associated with the growth characteristics of interest. A major benefit of functional mapping is that it integrates information over multiple timepoints, and therefore could increase the statistical power for QTL detection. We review the current development of computationally efficient functional mapping methods which provide invaluable tools for analyzing large-scale timecourse data that are readily available in our post-genome era.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Keywords:  functional mapping; high-throughput phenotyping; multiple-locus method; plant growth and development; quantitative trait loci; timecourse

Mesh:

Year:  2015        PMID: 26482958     DOI: 10.1016/j.tplants.2015.08.012

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  22 in total

1.  Estimating Modifying Effect of Age on Genetic and Environmental Variance Components in Twin Models.

Authors:  Liang He; Mikko J Sillanpää; Karri Silventoinen; Jaakko Kaprio; Janne Pitkäniemi
Journal:  Genetics       Date:  2016-02-11       Impact factor: 4.562

2.  Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry.

Authors:  Mitchell J Feldmann; Michael A Hardigan; Randi A Famula; Cindy M López; Amy Tabb; Glenn S Cole; Steven J Knapp
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Review 3.  Species-independent analytical tools for next-generation agriculture.

Authors:  Tedrick Thomas Salim Lew; Rajani Sarojam; In-Cheol Jang; Bong Soo Park; Naweed I Naqvi; Min Hao Wong; Gajendra P Singh; Rajeev J Ram; Oded Shoseyov; Kazuki Saito; Nam-Hai Chua; Michael S Strano
Journal:  Nat Plants       Date:  2020-11-30       Impact factor: 15.793

4.  The Genetic Architecture of Juvenile Growth Traits in the Conifer Torreya grandis as Revealed by Joint Linkage and Linkage Disequilibrium Mapping.

Authors:  Wenchong Chen; Weiwu Yu; Ang Dong; Yanru Zeng; Huwei Yuan; Bingsong Zheng; Rongling Wu
Journal:  Front Plant Sci       Date:  2022-06-27       Impact factor: 6.627

5.  Bayesian estimation and use of high-throughput remote sensing indices for quantitative genetic analyses of leaf growth.

Authors:  Robert L Baker; Wen Fung Leong; Nan An; Marcus T Brock; Matthew J Rubin; Stephen Welch; Cynthia Weinig
Journal:  Theor Appl Genet       Date:  2017-10-20       Impact factor: 5.699

6.  Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping.

Authors:  Nadia Al-Tamimi; Chris Brien; Helena Oakey; Bettina Berger; Stephanie Saade; Yung Shwen Ho; Sandra M Schmöckel; Mark Tester; Sónia Negrão
Journal:  Nat Commun       Date:  2016-11-17       Impact factor: 14.919

7.  Computational identification of genes modulating stem height-diameter allometry.

Authors:  Libo Jiang; Meixia Ye; Sheng Zhu; Yi Zhai; Meng Xu; Minren Huang; Rongling Wu
Journal:  Plant Biotechnol J       Date:  2016-06-15       Impact factor: 9.803

Review 8.  Use of Natural Diversity and Biotechnology to Increase the Quality and Nutritional Content of Tomato and Grape.

Authors:  Quentin Gascuel; Gianfranco Diretto; Antonio J Monforte; Ana M Fortes; Antonio Granell
Journal:  Front Plant Sci       Date:  2017-05-12       Impact factor: 5.753

Review 9.  Integrating High-Throughput Phenotyping and Statistical Genomic Methods to Genetically Improve Longitudinal Traits in Crops.

Authors:  Fabiana F Moreira; Hinayah R Oliveira; Jeffrey J Volenec; Katy M Rainey; Luiz F Brito
Journal:  Front Plant Sci       Date:  2020-05-26       Impact factor: 5.753

10.  A mapping framework of competition-cooperation QTLs that drive community dynamics.

Authors:  Libo Jiang; Xiaoqing He; Yi Jin; Meixia Ye; Mengmeng Sang; Nan Chen; Jing Zhu; Zuoran Zhang; Jinting Li; Rongling Wu
Journal:  Nat Commun       Date:  2018-08-01       Impact factor: 14.919

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