Literature DB >> 26479688

CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology.

Sonya V Iverson, Traci L Haddock, Jacob Beal1, Douglas M Densmore.   

Abstract

Multipart and modular DNA part libraries and assembly standards have become common tools in synthetic biology since the publication of the Gibson and Golden Gate assembly methods, yet no multipart modular library exists for use in bacterial systems. Building upon the existing MoClo assembly framework, we have developed a publicly available collection of modular DNA parts and enhanced MoClo protocols to enable rapid one-pot, multipart assembly, combinatorial design, and expression tuning in Escherichia coli. The Cross-disciplinary Integration of Design Automation Research lab (CIDAR) MoClo Library is openly available and contains promoters, ribosomal binding sites, coding sequence, terminators, vectors, and a set of fluorescent control plasmids. Optimized protocols reduce reaction time and cost by >80% from that of previously published protocols.

Entities:  

Keywords:  Type IIS; assembly; modular; multiplex; part library

Mesh:

Substances:

Year:  2015        PMID: 26479688     DOI: 10.1021/acssynbio.5b00124

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  33 in total

1.  Setting Up an Automated Biomanufacturing Laboratory.

Authors:  Marilene Pavan
Journal:  Methods Mol Biol       Date:  2021

2.  A plug-and-play pathway refactoring workflow for natural product research in Escherichia coli and Saccharomyces cerevisiae.

Authors:  Hengqian Ren; Pingfan Hu; Huimin Zhao
Journal:  Biotechnol Bioeng       Date:  2017-06-05       Impact factor: 4.530

Review 3.  Design Automation in Synthetic Biology.

Authors:  Evan Appleton; Curtis Madsen; Nicholas Roehner; Douglas Densmore
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-04-03       Impact factor: 10.005

4.  Standardizing Automated DNA Assembly: Best Practices, Metrics, and Protocols Using Robots.

Authors:  David I Walsh; Marilene Pavan; Luis Ortiz; Scott Wick; Johanna Bobrow; Nicholas J Guido; Sarah Leinicke; Dany Fu; Shreya Pandit; Lucy Qin; Peter A Carr; Douglas Densmore
Journal:  SLAS Technol       Date:  2019-02-15       Impact factor: 3.047

Review 5.  Engineering biological systems using automated biofoundries.

Authors:  Ran Chao; Shekhar Mishra; Tong Si; Huimin Zhao
Journal:  Metab Eng       Date:  2017-06-07       Impact factor: 9.783

6.  Genetic Engineering of Bee Gut Microbiome Bacteria with a Toolkit for Modular Assembly of Broad-Host-Range Plasmids.

Authors:  Sean P Leonard; Jiri Perutka; J Elijah Powell; Peng Geng; Darby D Richhart; Michelle Byrom; Shaunak Kar; Bryan W Davies; Andrew D Ellington; Nancy A Moran; Jeffrey E Barrick
Journal:  ACS Synth Biol       Date:  2018-04-13       Impact factor: 5.110

7.  Automated Robotic Liquid Handling Assembly of Modular DNA Devices.

Authors:  Luis Ortiz; Marilene Pavan; Lloyd McCarthy; Joshua Timmons; Douglas M Densmore
Journal:  J Vis Exp       Date:  2017-12-01       Impact factor: 1.355

8.  Low cost and open source multi-fluorescence imaging system for teaching and research in biology and bioengineering.

Authors:  Isaac Nuñez; Tamara Matute; Roberto Herrera; Juan Keymer; Timothy Marzullo; Timothy Rudge; Fernán Federici
Journal:  PLoS One       Date:  2017-11-15       Impact factor: 3.240

9.  Mobius Assembly: A versatile Golden-Gate framework towards universal DNA assembly.

Authors:  Andreas I Andreou; Naomi Nakayama
Journal:  PLoS One       Date:  2018-01-02       Impact factor: 3.240

10.  Reproducibility of Fluorescent Expression from Engineered Biological Constructs in E. coli.

Authors:  Jacob Beal; Traci Haddock-Angelli; Markus Gershater; Kim de Mora; Meagan Lizarazo; Jim Hollenhorst; Randy Rettberg
Journal:  PLoS One       Date:  2016-03-03       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.