Literature DB >> 26478485

CW-EPR Spectral Simulations: Slow-Motion Regime.

David E Budil1.   

Abstract

This chapter reviews the range of methods currently available for calculating the electron paramagnetic resonance (EPR) spectrum of nitroxide spin-labeled biomolecules undergoing slow motion. The two major approaches include the stochastic Liouville equation (SLE) which represents the spin label motion using diffusion operators, and the dynamic trajectory (DT) approach, which enables the EPR spectrum to be calculated from molecular dynamics simulations. The basic model parameters needed for each approach are described, together with a broad outline of the theoretical approaches underlying the methods, sufficient to allow their comparison for different applications. Hybrid methods utilizing a combination of SLE and DT approaches are briefly discussed.
© 2015 Elsevier Inc. All rights reserved.

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Keywords:  Brownian diffusion; Dynamic trajectory; Least-squares; Molecular dynamics; Nitroxide label; Orienting potential; Slow motion; Stochastic Liouville equation

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Year:  2015        PMID: 26478485     DOI: 10.1016/bs.mie.2015.05.024

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  1 in total

1.  Trajectory-Based Simulation of EPR Spectra: Models of Rotational Motion for Spin Labels on Proteins.

Authors:  Peter D Martin; Bengt Svensson; David D Thomas; Stefan Stoll
Journal:  J Phys Chem B       Date:  2019-11-21       Impact factor: 2.991

  1 in total

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