Literature DB >> 26477315

Murine melanomas accelerated by a single UVR exposure carry photoproduct footprints but lack UV signature C>T mutations in critical genes.

P Mukhopadhyay1, B Ferguson1, H K Muller2, H Y Handoko1, G J Walker1.   

Abstract

Ultraviolet radiation (UVR) exposure increases malignant melanoma (MM) risk, but in the context of acute, not cumulative exposure. C>T and CC>TT changes make up the overwhelming majority of single base substitutions (SBS) in MM DNA, as both precursor melanocytes and melanocytic lesions have incurred incidental exposures to sunlight. To study the mutagenic mechanisms by which acute sunburn accelerates MM, we sequenced the exomes of spontaneous and neonatal UVB-induced Cdk4-R24C::Tyr-NRASQ61K mouse MMs. UVR-induced MMs carried more SBSs than spontaneous MMs, but the levels of genomic instability, reflected by translocations and copy number changes, were not different. C>T/G>A was the most common SBS in spontaneous and UVR-induced MMs, only modestly increased in the latter. However, they tended to occur at the motif A/GpCpG (reflecting C>T transition due to spontaneous deamination of cytosine at CpG) in spontaneous MMs, and T/CpCpC/T (reflecting the effects of pyrimidine dimers on either side of the mutated C) in UVR-induced MMs. Unlike MMs associated with repetitive exposures, we observed no CC>TT changes. In addition, we also found UVR 'footprints' at T>A/A>Ts (at NpTpT) and T>C/A>G (at CpTpC). These footprints are also present in MMs from a chronic UVR mouse model, and in some human MMs, suggesting that they may be minor UVR signature changes. We found few significantly somatically mutated genes (~6 per spontaneous and 15 per UVR-induced melanoma) in addition to the Cdk4 and NRAS mutations already present. Trp53 was the most convincing recurrently mutated gene; however, in the UVR-induced MMs no Trp53 mutations were at C>T/G>A, suggesting that it was probably mutated during tumour progression, not directly induced by UVR photoproducts. The very low load of recurrent mutations convincingly induced by classical UVB-induced dimer photoproducts may support a role for cell extrinsic mechanisms, such as photoimmunosuppression and inflammation in driving MM after acute UVB exposure.

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Year:  2015        PMID: 26477315     DOI: 10.1038/onc.2015.386

Source DB:  PubMed          Journal:  Oncogene        ISSN: 0950-9232            Impact factor:   9.867


  41 in total

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Authors:  Judith Jans; George A Garinis; Wouter Schul; Adri van Oudenaren; Michael Moorhouse; Marcel Smid; Yurda-Gul Sert; Albertina van der Velde; Yvonne Rijksen; Frank R de Gruijl; Peter J van der Spek; Akira Yasui; Jan H J Hoeijmakers; Pieter J M Leenen; Gijsbertus T J van der Horst
Journal:  Mol Cell Biol       Date:  2006-09-11       Impact factor: 4.272

2.  Genomic Classification of Cutaneous Melanoma.

Authors: 
Journal:  Cell       Date:  2015-06-18       Impact factor: 41.582

3.  A new photoproduct of 5-methylcytosine and adenine characterized by high-performance liquid chromatography and mass spectrometry.

Authors:  Dian G T Su; John-Stephen A Taylor; Michael L Gross
Journal:  Chem Res Toxicol       Date:  2010-03-15       Impact factor: 3.739

4.  UV-radiation-specific p53 mutation frequency in normal skin as a predictor of risk of basal cell carcinoma.

Authors:  A Ouhtit; H Nakazawa; B K Armstrong; A Kricker; E Tan; H Yamasaki; D R English
Journal:  J Natl Cancer Inst       Date:  1998-04-01       Impact factor: 13.506

5.  UV and skin cancer: specific p53 gene mutation in normal skin as a biologically relevant exposure measurement.

Authors:  H Nakazawa; D English; P L Randell; K Nakazawa; N Martel; B K Armstrong; H Yamasaki
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-04       Impact factor: 11.205

Review 6.  The cell-cycle regulator CDK4: an emerging therapeutic target in melanoma.

Authors:  Karen E Sheppard; Grant A McArthur
Journal:  Clin Cancer Res       Date:  2013-10-01       Impact factor: 12.531

7.  Cell survival and shuttle vector mutagenesis induced by ultraviolet A and ultraviolet B radiation in a human cell line.

Authors:  C Robert; B Muel; A Benoit; L Dubertret; A Sarasin; A Stary
Journal:  J Invest Dermatol       Date:  1996-04       Impact factor: 8.551

8.  Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin.

Authors:  Iñigo Martincorena; Amit Roshan; Moritz Gerstung; Peter Ellis; Peter Van Loo; Stuart McLaren; David C Wedge; Anthony Fullam; Ludmil B Alexandrov; Jose M Tubio; Lucy Stebbings; Andrew Menzies; Sara Widaa; Michael R Stratton; Philip H Jones; Peter J Campbell
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

9.  Ultradeep sequencing detects GNAQ and GNA11 mutations in cell-free DNA from plasma of patients with uveal melanoma.

Authors:  Claudia Hd Metz; Max Scheulen; Norbert Bornfeld; Dietmar Lohmann; Michael Zeschnigk
Journal:  Cancer Med       Date:  2013-02-14       Impact factor: 4.452

10.  Ultraviolet radiation accelerates BRAF-driven melanomagenesis by targeting TP53.

Authors:  Amaya Viros; Berta Sanchez-Laorden; Malin Pedersen; Simon J Furney; Joel Rae; Kate Hogan; Sarah Ejiama; Maria Romina Girotti; Martin Cook; Nathalie Dhomen; Richard Marais
Journal:  Nature       Date:  2014-06-11       Impact factor: 49.962

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  10 in total

1.  Melanocyte transformation requires complete loss of all pocket protein function via a mechanism that mitigates the need for MAPK pathway activation.

Authors:  I D Tonks; P Mukhopadhyay; W A Schroder; A Sorolla; A W Mould; H Y Handoko; B Ferguson; H K Muller; P Keith; N K Hayward; G J Walker; G F Kay
Journal:  Oncogene       Date:  2017-02-13       Impact factor: 9.867

Review 2.  The Challenging Melanoma Landscape: From Early Drug Discovery to Clinical Approval.

Authors:  Mariana Matias; Jacinta O Pinho; Maria João Penetra; Gonçalo Campos; Catarina Pinto Reis; Maria Manuela Gaspar
Journal:  Cells       Date:  2021-11-09       Impact factor: 6.600

3.  Epigenetic and genetic dissections of UV-induced global gene dysregulation in skin cells through multi-omics analyses.

Authors:  Yao Shen; Milda Stanislauskas; Gen Li; Deyou Zheng; Liang Liu
Journal:  Sci Rep       Date:  2017-02-17       Impact factor: 4.379

4.  Melanoma-associated mutants within the serine-rich domain of PAK5 direct kinase activity to mitogenic pathways.

Authors:  Kyle M LaPak; Dennis C Vroom; Ayush A Garg; Xiangnan Guan; John L Hays; Jonathan W Song; Christin E Burd
Journal:  Oncotarget       Date:  2018-05-22

5.  Accelerating cancer without mutations.

Authors:  Douglas E Brash
Journal:  Elife       Date:  2019-03-21       Impact factor: 8.140

Review 6.  DNA Copy Number Variations as Markers of Mutagenic Impact.

Authors:  Galina Hovhannisyan; Tigran Harutyunyan; Rouben Aroutiounian; Thomas Liehr
Journal:  Int J Mol Sci       Date:  2019-09-24       Impact factor: 5.923

7.  hSSB2 (NABP1) is required for the recruitment of RPA during the cellular response to DNA UV damage.

Authors:  Didier Boucher; Ruvini Kariawasam; Joshua Burgess; Adrian Gimenez; Tristan E Ocampo; Blake Ferguson; Ali Naqi; Graeme J Walker; Emma Bolderson; Roland Gamsjaeger; Kenneth J O'Byrne; Liza Cubeddu; Kum Kum Khanna; Derek J Richard
Journal:  Sci Rep       Date:  2021-10-12       Impact factor: 4.379

8.  Different genetic mechanisms mediate spontaneous versus UVR-induced malignant melanoma.

Authors:  Blake Ferguson; Herlina Y Handoko; Pamela Mukhopadhyay; Arash Chitsazan; Lois Balmer; Grant Morahan; Graeme J Walker
Journal:  Elife       Date:  2019-01-25       Impact factor: 8.140

9.  Somatic synonymous mutations in regulatory elements contribute to the genetic aetiology of melanoma.

Authors:  Di Zhang; Junfeng Xia
Journal:  BMC Med Genomics       Date:  2020-04-03       Impact factor: 3.063

10.  UVB mutagenesis differs in Nras- and Braf-mutant mouse models of melanoma.

Authors:  Robert L Bowman; Rebecca C Hennessey; Tirzah J Weiss; David A Tallman; Emma R Crawford; Brandon M Murphy; Amy Webb; Souhui Zhang; Krista Md La Perle; Craig J Burd; Ross L Levine; A Hunter Shain; Christin E Burd
Journal:  Life Sci Alliance       Date:  2021-07-01
  10 in total

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