Literature DB >> 26470351

Reference Gene Validation for Quantitative PCR Under Various Biotic and Abiotic Stress Conditions in Toxoptera citricida (Hemiptera, Aphidiae).

Feng Shang1, Dan-Dan Wei1, Xuan-Zhao Jiang1, Dong Wei1, Guang-Mao Shen1, Ying-Cai Feng1, Ting Li1, Jin-Jun Wang2.   

Abstract

The regulation of mRNA expression level is critical for gene expression studies. Currently, quantitative reverse transcription polymerase chain reaction (qRT-PCR) is commonly used to investigate mRNA expression level of genes under various experimental conditions. An important factor that determines the optimal quantification of qRT-PCR data is the choice of the reference gene for normalization. To advance gene expression studies in Toxoptera citricida (Kirkaldy), an important citrus pest and a main vector of the Citrus tristeza virus, we used five tools (GeNorm, NormFinder, BestKeeper, ΔCt methods, and RefFinder) to evaluate seven candidate reference genes (elongation factor-1 alpha [EF1α], beta tubulin [β-TUB], 18S ribosomal RNA [18S], RNA polymerase II large subunit (RNAP II), beta actin (β-ACT), alpha tubulin, and glyceraldhyde-3-phosphate dehydrogenase) under different biotic (developmental stages and wing dimorphism) and abiotic stress (thermal, starvation, and UV irradiation) conditions. The results showed that EF1α and 18S were the most stable genes under various biotic states, β-ACT and β-TUB during thermal stress, EF1α and RNAP II under starvation stress, and RNAP II, β-ACT, and EF1α under UV irradiation stress conditions. This study provides useful resources for the transcriptional profiling of genes in T. citricida and closely related aphid species.
© The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

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Keywords:  agricultural pests; brown citrus aphid; normalization; quantitative reverse transcription PCR; reference gene

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Year:  2015        PMID: 26470351     DOI: 10.1093/jee/tov184

Source DB:  PubMed          Journal:  J Econ Entomol        ISSN: 0022-0493            Impact factor:   2.381


  14 in total

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3.  Silencing of Two Insulin Receptor Genes Disrupts Nymph-Adult Transition of Alate Brown Citrus Aphid.

Authors:  Bi-Yue Ding; Feng Shang; Qiang Zhang; Ying Xiong; Qun Yang; Jin-Zhi Niu; Guy Smagghe; Jin-Jun Wang
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4.  Selection and validation of reference genes for qRT-PCR analysis during biological invasions: The thermal adaptability of Bemisia tabaci MED.

Authors:  Tian-Mei Dai; Zhi-Chuang Lü; Wan-Xue Liu; Fang-Hao Wan
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5.  NADPH-Cytochrome P450 Reductase Mediates the Resistance of Aphis (Toxoptera) citricidus (Kirkaldy) to Abamectin.

Authors:  Tian-Xing Jing; Yang Tan; Bi-Yue Ding; Wei Dou; Dan-Dan Wei; Jin-Jun Wang
Journal:  Front Physiol       Date:  2018-08-10       Impact factor: 4.566

6.  Stability of selected reference genes in Sf9 cells treated with extrinsic apoptotic agents.

Authors:  Benshui Shu; Jingjing Zhang; Jie Zeng; Gaofeng Cui; Guohua Zhong
Journal:  Sci Rep       Date:  2019-10-02       Impact factor: 4.379

7.  Differential expression of genes in the alate and apterous morphs of the brown citrus aphid, Toxoptera citricida.

Authors:  Feng Shang; Bi-Yue Ding; Ying Xiong; Wei Dou; Dong Wei; Hong-Bo Jiang; Dan-Dan Wei; Jin-Jun Wang
Journal:  Sci Rep       Date:  2016-08-31       Impact factor: 4.379

8.  Selection of Reference Genes for the Normalization of RT-qPCR Data in Gene Expression Studies in Insects: A Systematic Review.

Authors:  Jing Lü; Chunxiao Yang; Youjun Zhang; Huipeng Pan
Journal:  Front Physiol       Date:  2018-11-06       Impact factor: 4.566

9.  Reference genes selection for quantitative gene expression studies in tea green leafhoppers, Empoasca onukii Matsuda.

Authors:  Yongchen Yu; Jin Zhang; Chen Huang; Xiangjie Hou; Xiaoling Sun; Bin Xiao
Journal:  PLoS One       Date:  2018-10-08       Impact factor: 3.240

10.  Identification and validation of potential reference gene for effective dsRNA knockdown analysis in Chilo partellus.

Authors:  Olawale Samuel Adeyinka; Bushra Tabassum; Idrees Ahmad Nasir; Iqra Yousaf; Imtiaz Ahmad Sajid; Khurram Shehzad; Anicet Batcho; Tayyab Husnain
Journal:  Sci Rep       Date:  2019-09-20       Impact factor: 4.379

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