Literature DB >> 26462753

The new nanophysiology: regulation of ionic flow in neuronal subcompartments.

David Holcman1, Rafael Yuste2.   

Abstract

Cable theory and the Goldman-Hodgkin-Huxley-Katz models for the propagation of ions and voltage within a neuron have provided a theoretical foundation for electrophysiology and been responsible for many cornerstone advances in neuroscience. However, these theories break down when they are applied to small neuronal compartments, such as dendritic spines, synaptic terminals or small neuronal processes, because they assume spatial and ionic homogeneity. Here we discuss a broader theory that uses the Poisson-Nernst-Planck (PNP) approximation and electrodiffusion to more accurately model the constraints that neuronal nanostructures place on electrical current flow. This extension of traditional cable theory could advance our understanding of the physiology of neuronal nanocompartments.

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Year:  2015        PMID: 26462753     DOI: 10.1038/nrn4022

Source DB:  PubMed          Journal:  Nat Rev Neurosci        ISSN: 1471-003X            Impact factor:   34.870


  41 in total

Review 1.  From structure to function in open ionic channels.

Authors:  R S Eisenberg
Journal:  J Membr Biol       Date:  1999-09-01       Impact factor: 1.843

2.  Branching dendritic trees and motoneuron membrane resistivity.

Authors:  W RALL
Journal:  Exp Neurol       Date:  1959-11       Impact factor: 5.330

3.  Axon branching and synaptic bouton phenotypes in GABAergic nonpyramidal cell subtypes.

Authors:  Fuyuki Karube; Yoshiyuki Kubota; Yasuo Kawaguchi
Journal:  J Neurosci       Date:  2004-03-24       Impact factor: 6.167

4.  Diffusion in a dendritic spine: the role of geometry.

Authors:  A Biess; E Korkotian; D Holcman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-21

5.  Live-cell imaging of dendritic spines by STED microscopy.

Authors:  U Valentin Nägerl; Katrin I Willig; Birka Hein; Stefan W Hell; Tobias Bonhoeffer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-21       Impact factor: 11.205

6.  Residence times of receptors in dendritic spines analyzed by stochastic simulations in empirical domains.

Authors:  Nathanael Hoze; David Holcman
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

7.  Synaptopodin regulates release of calcium from stores in dendritic spines of cultured hippocampal neurons.

Authors:  Eduard Korkotian; Menahem Segal
Journal:  J Physiol       Date:  2011-10-24       Impact factor: 5.182

8.  Calcium dynamics in dendritic spines and spine motility.

Authors:  D Holcman; Z Schuss; E Korkotian
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

9.  Electric fields due to synaptic currents sharpen excitatory transmission.

Authors:  Sergiy Sylantyev; Leonid P Savtchenko; Yin-Ping Niu; Anton I Ivanov; Thomas P Jensen; Dimitri M Kullmann; Min-Yi Xiao; Dmitri A Rusakov
Journal:  Science       Date:  2008-03-28       Impact factor: 47.728

10.  Ultrastructure of dendritic spines: correlation between synaptic and spine morphologies.

Authors:  Jon I Arellano; Ruth Benavides-Piccione; Javier Defelipe; Rafael Yuste
Journal:  Front Neurosci       Date:  2007-10-15       Impact factor: 4.677

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  21 in total

1.  Sensitivity analysis of the Poisson Nernst-Planck equations: a finite element approximation for the sensitive analysis of an electrodiffusion model.

Authors:  Ibrahima Dione; Nicolas Doyon; Jean Deteix
Journal:  J Math Biol       Date:  2018-09-05       Impact factor: 2.259

2.  Deconvolution of Voltage Sensor Time Series and Electro-diffusion Modeling Reveal the Role of Spine Geometry in Controlling Synaptic Strength.

Authors:  Jerome Cartailler; Taekyung Kwon; Rafael Yuste; David Holcman
Journal:  Neuron       Date:  2018-02-08       Impact factor: 17.173

3.  Sodium Channel β2 Subunits Prevent Action Potential Propagation Failures at Axonal Branch Points.

Authors:  In Ha Cho; Lauren C Panzera; Morven Chin; Michael B Hoppa
Journal:  J Neurosci       Date:  2017-09-04       Impact factor: 6.167

4.  Electrodiffusion models of synaptic potentials in dendritic spines.

Authors:  Thibault Lagache; Krishna Jayant; Rafael Yuste
Journal:  J Comput Neurosci       Date:  2019-08-13       Impact factor: 1.621

Review 5.  Time for NanoNeuro.

Authors:  Aitzol Garcia-Etxarri; Rafael Yuste
Journal:  Nat Methods       Date:  2021-10-18       Impact factor: 28.547

6.  Computational models reveal how chloride dynamics determine the optimal distribution of inhibitory synapses to minimise dendritic excitability.

Authors:  Christopher Brian Currin; Joseph Valentino Raimondo
Journal:  PLoS Comput Biol       Date:  2022-09-23       Impact factor: 4.779

7.  Sodium Dynamics in Pyramidal Neuron Dendritic Spines: Synaptically Evoked Entry Predominantly through AMPA Receptors and Removal by Diffusion.

Authors:  Kenichi Miyazaki; William N Ross
Journal:  J Neurosci       Date:  2017-09-13       Impact factor: 6.167

Review 8.  Measuring Absolute Membrane Potential Across Space and Time.

Authors:  Julia R Lazzari-Dean; Anneliese M M Gest; Evan W Miller
Journal:  Annu Rev Biophys       Date:  2021-03-02       Impact factor: 12.981

9.  Conductance of porous media depends on external electric fields.

Authors:  Leonid P Savtchenko; Kaiyu Zheng; Dmitri A Rusakov
Journal:  Biophys J       Date:  2021-02-18       Impact factor: 4.033

Review 10.  Electrodiffusion phenomena in neuroscience: a neglected companion.

Authors:  Leonid P Savtchenko; Mu Ming Poo; Dmitri A Rusakov
Journal:  Nat Rev Neurosci       Date:  2017-09-19       Impact factor: 34.870

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