Literature DB >> 26461462

Goodness-of-fit test of the stratified mark-specific proportional hazards model with continuous mark.

Yanqing Sun1, Mei Li2, Peter B Gilbert3.   

Abstract

Motivated by the need to assess HIV vaccine efficacy, previous studies proposed an extension of the discrete competing risks proportional hazards model, in which the cause of failure is replaced by a continuous mark only observed at the failure time. However the model assumptions may fail in several ways, and no diagnostic testing procedure for this situation has been proposed. A goodness-of-fit test procedure for the stratified mark-specific proportional hazards model in which the regression parameters depend nonparametrically on the mark and the baseline hazards depends nonparametrically on both time and the mark is proposed. The test statistics are constructed based on the weighted cumulative mark-specific martingale residuals. The critical values of the proposed test statistics are approximated using the Gaussian multiplier method. The performance of the proposed tests are examined extensively in simulations for a variety of the models under the null hypothesis and under different types of alternative models. An analysis of the 'Step' HIV vaccine efficacy trial using the proposed method is presented. The analysis suggests that the HIV vaccine candidate may increase susceptibility to HIV acquisition.

Entities:  

Keywords:  Asymptotics; Bandwidth selection; Competing risks; Cumulative mark-specific martingale residuals; Gaussian multiplier method; HIV vaccine efficacy trial; HVTN 502 Step trial; Immune responses; Local partial likelihood estimation; Mark-specific hazard ratio; Semiparametric failure time model

Year:  2014        PMID: 26461462      PMCID: PMC4598956          DOI: 10.1016/j.csda.2014.11.012

Source DB:  PubMed          Journal:  Comput Stat Data Anal        ISSN: 0167-9473            Impact factor:   1.681


  13 in total

1.  Tests for comparing mark-specific hazards and cumulative incidence functions.

Authors:  Peter B Gilbert; Ian W McKeague; Yanqing Sun
Journal:  Lifetime Data Anal       Date:  2004-03       Impact factor: 1.588

2.  Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach.

Authors:  S Buus; S L Lauemøller; P Worning; C Kesmir; T Frimurer; S Corbet; A Fomsgaard; J Hilden; A Holm; S Brunak
Journal:  Tissue Antigens       Date:  2003-11

3.  Leveraging information across HLA alleles/supertypes improves epitope prediction.

Authors:  David Heckerman; Carl Kadie; Jennifer Listgarten
Journal:  J Comput Biol       Date:  2007 Jul-Aug       Impact factor: 1.479

4.  The 2-sample problem for failure rates depending on a continuous mark: an application to vaccine efficacy.

Authors:  Peter B Gilbert; Ian W McKeague; Yanqing Sun
Journal:  Biostatistics       Date:  2007-08-17       Impact factor: 5.899

5.  Effects of mismodelling and mismeasuring explanatory variables on tests of their association with a response variable.

Authors:  S W Lagakos
Journal:  Stat Med       Date:  1988 Jan-Feb       Impact factor: 2.373

6.  Properties of proportional-hazards score tests under misspecified regression models.

Authors:  S W Lagakos; D A Schoenfeld
Journal:  Biometrics       Date:  1984-12       Impact factor: 2.571

7.  Mark-specific proportional hazards model with multivariate continuous marks and its application to HIV vaccine efficacy trials.

Authors:  Yanqing Sun; Mei Li; Peter B Gilbert
Journal:  Biostatistics       Date:  2012-07-03       Impact factor: 5.899

8.  PROPORTIONAL HAZARDS MODELS WITH CONTINUOUS MARKS.

Authors:  Yanqing Sun; Peter B Gilbert; Ian W McKeague
Journal:  Ann Stat       Date:  2009-02-01       Impact factor: 4.028

9.  Inferences on relative failure rates in stratified mark-specific proportional hazards models with missing marks, with application to HIV vaccine efficacy trials.

Authors:  Peter B Gilbert; Yanqing Sun
Journal:  J R Stat Soc Ser C Appl Stat       Date:  2015-01-01       Impact factor: 1.864

10.  Estimation of Stratified Mark-Specific Proportional Hazards Models with Missing Marks.

Authors:  Yanqing Sun; Peter B Gilbert
Journal:  Scand Stat Theory Appl       Date:  2012-03       Impact factor: 1.396

View more
  3 in total

1.  Estimation of Stratified Mark-Specific Proportional Hazards Models under Two-Phase Sampling with Application to HIV Vaccine Efficacy Trials.

Authors:  Guangren Yang; Yanqing Sun; Li Qi; Peter B Gilbert
Journal:  Stat Biosci       Date:  2016-10-27

2.  Mark-specific additive hazards regression with continuous marks.

Authors:  Dongxiao Han; Liuquan Sun; Yanqing Sun; Li Qi
Journal:  Lifetime Data Anal       Date:  2016-05-11       Impact factor: 1.588

3.  A Hybrid Approach for the Stratified Mark-Specific Proportional Hazards Model with Missing Covariates and Missing Marks, with Application to Vaccine Efficacy Trials.

Authors:  Yanqing Sun; Li Qi; Fei Heng; Peter B Gilbert
Journal:  J R Stat Soc Ser C Appl Stat       Date:  2020-05-22       Impact factor: 1.864

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.