Literature DB >> 26456335

A Comprehensive Analysis of Replicative Lifespan in 4,698 Single-Gene Deletion Strains Uncovers Conserved Mechanisms of Aging.

Mark A McCormick1, Joe R Delaney2, Mitsuhiro Tsuchiya1, Scott Tsuchiyama1, Anna Shemorry3, Sylvia Sim3, Annie Chia-Zong Chou3, Umema Ahmed3, Daniel Carr3, Christopher J Murakami3, Jennifer Schleit3, George L Sutphin2, Brian M Wasko3, Christopher F Bennett2, Adrienne M Wang3, Brady Olsen3, Richard P Beyer4, Theodor K Bammler4, Donna Prunkard3, Simon C Johnson3, Juniper K Pennypacker1, Elroy An3, Arieanna Anies1, Anthony S Castanza3, Eunice Choi3, Nick Dang3, Shiena Enerio1, Marissa Fletcher3, Lindsay Fox5, Sarani Goswami3, Sean A Higgins3, Molly A Holmberg6, Di Hu6, Jessica Hui3, Monika Jelic6, Ki-Soo Jeong3, Elijah Johnston3, Emily O Kerr3, Jin Kim6, Diana Kim6, Katie Kirkland3, Shannon Klum3, Soumya Kotireddy5, Eric Liao6, Michael Lim6, Michael S Lin3, Winston C Lo6, Dan Lockshon1, Hillary A Miller3, Richard M Moller5, Brian Muller6, Jonathan Oakes6, Diana N Pak5, Zhao Jun Peng6, Kim M Pham5, Tom G Pollard6, Prarthana Pradeep6, Dillon Pruett6, Dilreet Rai6, Brett Robison1, Ariana A Rodriguez1, Bopharoth Ros6, Michael Sage6, Manpreet K Singh6, Erica D Smith5, Katie Snead6, Amrita Solanky6, Benjamin L Spector6, Kristan K Steffen3, Bie Nga Tchao3, Marc K Ting1, Helen Vander Wende3, Dennis Wang6, K Linnea Welton3, Eric A Westman3, Rachel B Brem1, Xin-Guang Liu7, Yousin Suh8, Zhongjun Zhou9, Matt Kaeberlein10, Brian K Kennedy11.   

Abstract

Many genes that affect replicative lifespan (RLS) in the budding yeast Saccharomyces cerevisiae also affect aging in other organisms such as C. elegans and M. musculus. We performed a systematic analysis of yeast RLS in a set of 4,698 viable single-gene deletion strains. Multiple functional gene clusters were identified, and full genome-to-genome comparison demonstrated a significant conservation in longevity pathways between yeast and C. elegans. Among the mechanisms of aging identified, deletion of tRNA exporter LOS1 robustly extended lifespan. Dietary restriction (DR) and inhibition of mechanistic Target of Rapamycin (mTOR) exclude Los1 from the nucleus in a Rad53-dependent manner. Moreover, lifespan extension from deletion of LOS1 is nonadditive with DR or mTOR inhibition, and results in Gcn4 transcription factor activation. Thus, the DNA damage response and mTOR converge on Los1-mediated nuclear tRNA export to regulate Gcn4 activity and aging.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26456335      PMCID: PMC4862740          DOI: 10.1016/j.cmet.2015.09.008

Source DB:  PubMed          Journal:  Cell Metab        ISSN: 1550-4131            Impact factor:   27.287


  67 in total

1.  Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone.

Authors:  Vivian L MacKay; Xiaohong Li; Mark R Flory; Eileen Turcott; G Lynn Law; Kyle A Serikawa; X L Xu; Hookeun Lee; David R Goodlett; Ruedi Aebersold; Lue Ping Zhao; David R Morris
Journal:  Mol Cell Proteomics       Date:  2004-02-06       Impact factor: 5.911

2.  Individual comparisons of grouped data by ranking methods.

Authors:  F WILCOXON
Journal:  J Econ Entomol       Date:  1946-04       Impact factor: 2.381

3.  Protein-O-glycosylation in yeast: protein-specific mannosyltransferases.

Authors:  M Gentzsch; W Tanner
Journal:  Glycobiology       Date:  1997-06       Impact factor: 4.313

4.  Absence of mitochondrial translation control proteins extends life span by activating sirtuin-dependent silencing.

Authors:  Antonio Caballero; Ana Ugidos; Beidong Liu; David Öling; Kristian Kvint; Xinxin Hao; Cora Mignat; Laurence Nachin; Mikael Molin; Thomas Nyström
Journal:  Mol Cell       Date:  2011-05-06       Impact factor: 17.970

5.  Nutrient-sensitive mitochondrial NAD+ levels dictate cell survival.

Authors:  Hongying Yang; Tianle Yang; Joseph A Baur; Evelyn Perez; Takashi Matsui; Juan J Carmona; Dudley W Lamming; Nadja C Souza-Pinto; Vilhelm A Bohr; Anthony Rosenzweig; Rafael de Cabo; Anthony A Sauve; David A Sinclair
Journal:  Cell       Date:  2007-09-21       Impact factor: 41.582

6.  Crosstalk between mitochondrial stress signals regulates yeast chronological lifespan.

Authors:  Elizabeth A Schroeder; Gerald S Shadel
Journal:  Mech Ageing Dev       Date:  2013-12-25       Impact factor: 5.432

7.  Proteins in the nutrient-sensing and DNA damage checkpoint pathways cooperate to restrain mitotic progression following DNA damage.

Authors:  Jennifer S Searle; Matthew D Wood; Mandeep Kaur; David V Tobin; Yolanda Sanchez
Journal:  PLoS Genet       Date:  2011-07-14       Impact factor: 5.917

8.  InParanoid 7: new algorithms and tools for eukaryotic orthology analysis.

Authors:  Gabriel Ostlund; Thomas Schmitt; Kristoffer Forslund; Tina Köstler; David N Messina; Sanjit Roopra; Oliver Frings; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2009-11-05       Impact factor: 16.971

9.  Genome-Wide RNAi Longevity Screens in Caenorhabditis elegans.

Authors:  Melana E Yanos; Christopher F Bennett; Matt Kaeberlein
Journal:  Curr Genomics       Date:  2012-11       Impact factor: 2.236

10.  Lifespan regulation by evolutionarily conserved genes essential for viability.

Authors:  Sean P Curran; Gary Ruvkun
Journal:  PLoS Genet       Date:  2007-02-27       Impact factor: 5.917

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  108 in total

1.  Systematic analysis of asymmetric partitioning of yeast proteome between mother and daughter cells reveals "aging factors" and mechanism of lifespan asymmetry.

Authors:  Jing Yang; Mark A McCormick; Jiashun Zheng; Zhengwei Xie; Mitsuhiro Tsuchiya; Scott Tsuchiyama; Hana El-Samad; Qi Ouyang; Matt Kaeberlein; Brian K Kennedy; Hao Li
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

2.  Potassium restriction boosts vacuolar acidity and extends lifespan in yeast.

Authors:  Arjun N Sasikumar; David W Killilea; Brian K Kennedy; Rachel B Brem
Journal:  Exp Gerontol       Date:  2019-02-08       Impact factor: 4.032

3.  A system to identify inhibitors of mTOR signaling using high-resolution growth analysis in Saccharomyces cerevisiae.

Authors:  Mitchell B Lee; Daniel T Carr; Michael G Kiflezghi; Yan Ting Zhao; Deborah B Kim; Socheata Thon; Margarete D Moore; Mary Ann K Li; Matt Kaeberlein
Journal:  Geroscience       Date:  2017-07-13       Impact factor: 7.713

4.  Translation attenuation by minocycline enhances longevity and proteostasis in old post-stress-responsive organisms.

Authors:  Gregory M Solis; Rozina Kardakaris; Elizabeth R Valentine; Liron Bar-Peled; Alice L Chen; Megan M Blewett; Mark A McCormick; James R Williamson; Brian Kennedy; Benjamin F Cravatt; Michael Petrascheck
Journal:  Elife       Date:  2018-11-27       Impact factor: 8.140

Review 5.  The role of mitochondria in aging.

Authors:  Ji Yong Jang; Arnon Blum; Jie Liu; Toren Finkel
Journal:  J Clin Invest       Date:  2018-07-30       Impact factor: 14.808

6.  Translational Geroscience: From invertebrate models to companion animal and human interventions.

Authors:  Mitchell B Lee; Matt Kaeberlein
Journal:  Transl Med Aging       Date:  2018-08-17

7.  Ssd1 and Gcn2 suppress global translation efficiency in replicatively aged yeast while their activation extends lifespan.

Authors:  Zheng Hu; Bo Xia; Spike Dl Postnikoff; Zih-Jie Shen; Alin S Tomoiaga; Troy A Harkness; Ja Hwan Seol; Wei Li; Kaifu Chen; Jessica K Tyler
Journal:  Elife       Date:  2018-08-17       Impact factor: 8.140

Review 8.  Is Gcn4-induced autophagy the ultimate downstream mechanism by which hormesis extends yeast replicative lifespan?

Authors:  Zih-Jie Shen; Spike Postnikoff; Jessica K Tyler
Journal:  Curr Genet       Date:  2019-01-23       Impact factor: 3.886

9.  Defining the impact of mutation accumulation on replicative lifespan in yeast using cancer-associated mutator phenotypes.

Authors:  Mitchell B Lee; Ian T Dowsett; Daniel T Carr; Brian M Wasko; Sarah G Stanton; Michael S Chung; Niloufar Ghodsian; Anna Bode; Michael G Kiflezghi; Priya A Uppal; Katherine A Grayden; Yordanos C Elala; Thao T Tang; Ngoc H B Tran; Thu H B Tran; Anh B Diep; Michael Hope; Daniel E L Promislow; Scott R Kennedy; Matt Kaeberlein; Alan J Herr
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-04       Impact factor: 11.205

10.  The paths of mortality: how understanding the biology of aging can help explain systems behavior of single cells.

Authors:  Matthew M Crane; Matt Kaeberlein
Journal:  Curr Opin Syst Biol       Date:  2017-12-06
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