Literature DB >> 26456135

In Situ Cryo-Electron Tomography: A Post-Reductionist Approach to Structural Biology.

Shoh Asano1, Benjamin D Engel1, Wolfgang Baumeister2.   

Abstract

Cryo-electron tomography is a powerful technique that can faithfully image the native cellular environment at nanometer resolution. Unlike many other imaging approaches, cryo-electron tomography provides a label-free method of detecting biological structures, relying on the intrinsic contrast of frozen cellular material for direct identification of macromolecules. Recent advances in sample preparation, detector technology, and phase plate imaging have enabled the structural characterization of protein complexes within intact cells. Here, we review these technical developments and outline a detailed computational workflow for in situ structural analysis. Two recent studies are described to illustrate how this workflow can be adapted to examine both known and unknown cellular complexes. The stage is now set to realize the promise of visual proteomics--a complete structural description of the cell's native molecular landscape.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Keywords:  cryo-EM; subtomogram averaging; template matching; tomography; visual proteomics

Mesh:

Substances:

Year:  2015        PMID: 26456135     DOI: 10.1016/j.jmb.2015.09.030

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  53 in total

1.  Biology and the art of abstraction.

Authors:  Petra Schwille
Journal:  Biophys Rev       Date:  2017-07-29

Review 2.  Cryo-electron tomography: an ideal method to study membrane-associated proteins.

Authors:  Michelle A Dunstone; Alex de Marco
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-08-05       Impact factor: 6.237

3.  Three-Dimensional Structure of the Ultraoligotrophic Marine Bacterium "Candidatus Pelagibacter ubique".

Authors:  Xiaowei Zhao; Cindi L Schwartz; Jason Pierson; Stephen J Giovannoni; J Richard McIntosh; Daniela Nicastro
Journal:  Appl Environ Microbiol       Date:  2017-01-17       Impact factor: 4.792

4.  High Rac1 activity is functionally translated into cytosolic structures with unique nanoscale cytoskeletal architecture.

Authors:  Daniel J Marston; Karen L Anderson; Mark F Swift; Marie Rougie; Christopher Page; Klaus M Hahn; Niels Volkmann; Dorit Hanein
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-10       Impact factor: 11.205

5.  Local Tension on Talin in Focal Adhesions Correlates with F-Actin Alignment at the Nanometer Scale.

Authors:  Abhishek Kumar; Karen L Anderson; Mark F Swift; Dorit Hanein; Niels Volkmann; Martin A Schwartz
Journal:  Biophys J       Date:  2018-09-10       Impact factor: 4.033

Review 6.  Toward correlating structure and mechanics of platelets.

Authors:  Simona Sorrentino; Jan-Dirk Studt; Melanie Bokstad Horev; Ohad Medalia; K Tanuj Sapra
Journal:  Cell Adh Migr       Date:  2016-04-22       Impact factor: 3.405

Review 7.  Cellular Biophysics.

Authors:  Rick Horwitz
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

Review 8.  Filament assemblies in foreign nucleic acid sensors.

Authors:  Jungsan Sohn; Sun Hur
Journal:  Curr Opin Struct Biol       Date:  2016-02-07       Impact factor: 6.809

9.  Automated tilt series alignment and tomographic reconstruction in IMOD.

Authors:  David N Mastronarde; Susannah R Held
Journal:  J Struct Biol       Date:  2016-07-19       Impact factor: 2.867

10.  Marker-free method for accurate alignment between correlated light, cryo-light, and electron cryo-microscopy data using sample support features.

Authors:  Karen L Anderson; Christopher Page; Mark F Swift; Dorit Hanein; Niels Volkmann
Journal:  J Struct Biol       Date:  2017-11-04       Impact factor: 2.867

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