Literature DB >> 26452170

Do Macromolecular Crowding Agents Exert Only an Excluded Volume Effect? A Protein Solvation Study.

Sanjib K Mukherjee1, Saurabh Gautam1, Saikat Biswas1, Jayanta Kundu1, Pramit K Chowdhury1.   

Abstract

The effect of macromolecular crowding on protein structure and dynamics has mostly been explained on the basis of the excluded volume effect, its origin being entropic. In recent times a progressive shift in this view has been taking place with increasing emphasis on soft interactions that are enthalpic by nature. Using very low concentrations (1-10 g/L) of both synthetic (dextran- and poly(ethylene glycol) (PEG)-based) and protein (α-synuclein and myoglobin)-based crowders, we have shown that the solvation of probe molecule ANS (1-anilinonapthalene-8-sulfonate) bound to serum proteins bovine serum albumin (BSA) and human serum albumin (HSA) is significantly modulated in both a protein- and crowder-dependent fashion. Since under such conditions the effect of excluded volume is appreciably low, we propose that our observations are direct evidence of soft interactions between the macromolecular crowding agents used and the serum proteins. Moreover, our data reveal, that since at these low crowder concentrations major perturbations to the protein structure are unlikely to take place while minor perturbations might not be readily visible, protein solvation provides a unique spectral signature for capturing such local dynamics, thereby allowing one to decouple hard-sphere interactions from soft sphere ones. Furthermore, since fast fluctuations are known to play a major role in determining the functional characteristics of proteins and enzymes, our results suggest that such motions are prone to be modulated even when the cellular crowding conditions are quite relaxed. In other words, by the time the excluded volume effects come into the picture in the physiological milieu, modulations of functionally important protein motions that need a relatively lower activation energy have already taken place as a result of the aforementioned enthalpic (soft) interactions.

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Year:  2015        PMID: 26452170     DOI: 10.1021/acs.jpcb.5b09446

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  12 in total

1.  Soft Interactions with Model Crowders and Non-canonical Interactions with Cellular Proteins Stabilize RNA Folding.

Authors:  May Daher; Julia R Widom; Wendy Tay; Nils G Walter
Journal:  J Mol Biol       Date:  2017-11-08       Impact factor: 5.469

Review 2.  Molecular simulations of cellular processes.

Authors:  Fabio Trovato; Giordano Fumagalli
Journal:  Biophys Rev       Date:  2017-11-28

3.  Slow-Down in Diffusion in Crowded Protein Solutions Correlates with Transient Cluster Formation.

Authors:  Grzegorz Nawrocki; Po-Hung Wang; Isseki Yu; Yuji Sugita; Michael Feig
Journal:  J Phys Chem B       Date:  2017-11-30       Impact factor: 2.991

4.  Crowding in Cellular Environments at an Atomistic Level from Computer Simulations.

Authors:  Michael Feig; Isseki Yu; Po-Hung Wang; Grzegorz Nawrocki; Yuji Sugita
Journal:  J Phys Chem B       Date:  2017-07-12       Impact factor: 2.991

5.  Macromolecular crowding directs the motion of small molecules inside cells.

Authors:  Stephen Smith; Claudia Cianci; Ramon Grima
Journal:  J R Soc Interface       Date:  2017-06       Impact factor: 4.118

6.  All atom insights into the impact of crowded environments on protein stability by NMR spectroscopy.

Authors:  Birgit Köhn; Michael Kovermann
Journal:  Nat Commun       Date:  2020-11-13       Impact factor: 14.919

7.  Chaperone-Like Activity of HSPB5: The Effects of Quaternary Structure Dynamics and Crowding.

Authors:  Natalia A Chebotareva; Svetlana G Roman; Vera A Borzova; Tatiana B Eronina; Valeriya V Mikhaylova; Boris I Kurganov
Journal:  Int J Mol Sci       Date:  2020-07-13       Impact factor: 5.923

8.  Revisiting the Rate-Limiting Step of the ANS-Protein Binding at the Protein Surface and Inside the Hydrophobic Cavity.

Authors:  Chikashi Ota; Shun-Ichi Tanaka; Kazufumi Takano
Journal:  Molecules       Date:  2021-01-14       Impact factor: 4.411

9.  Macromolecular crowding effects on the kinetics of opposing reactions catalyzed by alcohol dehydrogenase.

Authors:  Xander E Wilcox; Charmaine B Chung; Kristin M Slade
Journal:  Biochem Biophys Rep       Date:  2021-02-20

10.  An optimized strategy to measure protein stability highlights differences between cold and hot unfolded states.

Authors:  Caterina Alfano; Domenico Sanfelice; Stephen R Martin; Annalisa Pastore; Piero Andrea Temussi
Journal:  Nat Commun       Date:  2017-05-18       Impact factor: 14.919

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