Literature DB >> 26446134

Rust-Bio: a fast and safe bioinformatics library.

Johannes Köster1.   

Abstract

SUMMARY: We present Rust-Bio, the first general purpose bioinformatics library for the innovative Rust programming language. Rust-Bio leverages the unique combination of speed, memory safety and high-level syntax offered by Rust to provide a fast and safe set of bioinformatics algorithms and data structures with a focus on sequence analysis.
AVAILABILITY AND IMPLEMENTATION: Rust-Bio is available open source under the MIT license at https://rust-bio.github.io. CONTACT: koester@jimmy.harvard.edu SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
© The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Mesh:

Year:  2015        PMID: 26446134     DOI: 10.1093/bioinformatics/btv573

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  7 in total

1.  A Bayesian model for single cell transcript expression analysis on MERFISH data.

Authors:  Johannes Köster; Myles Brown; X Shirley Liu
Journal:  Bioinformatics       Date:  2019-03-15       Impact factor: 6.937

Review 2.  Software tools, databases and resources in metabolomics: updates from 2018 to 2019.

Authors:  Keiron O'Shea; Biswapriya B Misra
Journal:  Metabolomics       Date:  2020-03-07       Impact factor: 4.290

3.  Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.

Authors:  Peter Edge; Vikas Bansal
Journal:  Nat Commun       Date:  2019-10-11       Impact factor: 14.919

4.  GeneDB and Wikidata.

Authors:  Magnus Manske; Ulrike Böhme; Christoph Püthe; Matt Berriman
Journal:  Wellcome Open Res       Date:  2019-10-14

5.  Evaluation of Rust code verbosity, understandability and complexity.

Authors:  Luca Ardito; Luca Barbato; Riccardo Coppola; Michele Valsesia
Journal:  PeerJ Comput Sci       Date:  2021-02-26

6.  FCLQC: fast and concurrent lossless quality scores compressor.

Authors:  Minhyeok Cho; Albert No
Journal:  BMC Bioinformatics       Date:  2021-12-20       Impact factor: 3.169

7.  flopp: Extremely Fast Long-Read Polyploid Haplotype Phasing by Uniform Tree Partitioning.

Authors:  Jim Shaw; Yun William Yu
Journal:  J Comput Biol       Date:  2022-01-17       Impact factor: 1.479

  7 in total

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