Literature DB >> 26442195

Phage on the stage.

Louise Temple1, Lynn Lewis1.   

Abstract

The resurgence of interest in bacteriophages for use in combating antibiotic resistant bacteria is coincident with an urgent call for more effective science education practices, including hands-on learning opportunities. To address this issue, a number of solutions have been proposed, including a large educational experiment, begun in 2007 by the Howard Hughes Medical Institute and currently involving over 85 colleges and universities, which has students discovering unique phages, obtaining images, and purifying phage DNA. A subset of these phage genomes is sequenced and analyzed using bioinformatics tools. Papers describing individual phage discoveries and comparative genomic studies are being published regularly. The vast majority of students in the program are in their first year of college, a critical time in capturing their interest and retaining them as science majors. This viral discovery model is being adopted and modified by a wide variety of educational institutions using a number of different bacterial hosts. In the opinion of the authors, this program and others like it represent a model accessible to virtually any undergraduate setting. And because of these programs, bacteriophage enthusiasts (academics, health professionals, biotechnology companies) can look forward to more well prepared students entering their ranks and should anticipate many more potentially useful phages discovered and characterized.

Entities:  

Keywords:  Bacteriophages; bioinformatics; genomics; original research; phage discovery; phage methods; undergraduate education

Year:  2015        PMID: 26442195      PMCID: PMC4588534          DOI: 10.1080/21597081.2015.1062589

Source DB:  PubMed          Journal:  Bacteriophage        ISSN: 2159-7073


  30 in total

1.  Genome Consortium for Active Teaching: meeting the goals of BIO2010.

Authors:  A Malcolm Campbell; Mary Lee S Ledbetter; Laura L M Hoopes; Todd T Eckdahl; Laurie J Heyer; Anne Rosenwald; Edison Fowlks; Scott Tonidandel; Brooke Bucholtz; Gail Gottfried
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

2.  Teaching synthetic biology, bioinformatics and engineering to undergraduates: the interdisciplinary Build-a-Genome course.

Authors:  Jessica S Dymond; Lisa Z Scheifele; Sarah Richardson; Pablo Lee; Srinivasan Chandrasegaran; Joel S Bader; Jef D Boeke
Journal:  Genetics       Date:  2008-11-17       Impact factor: 4.562

3.  The genomics education partnership: successful integration of research into laboratory classes at a diverse group of undergraduate institutions.

Authors:  Christopher D Shaffer; Consuelo Alvarez; Cheryl Bailey; Daron Barnard; Satish Bhalla; Chitra Chandrasekaran; Vidya Chandrasekaran; Hui-Min Chung; Douglas R Dorer; Chunguang Du; Todd T Eckdahl; Jeff L Poet; Donald Frohlich; Anya L Goodman; Yuying Gosser; Charles Hauser; Laura L M Hoopes; Diana Johnson; Christopher J Jones; Marian Kaehler; Nighat Kokan; Olga R Kopp; Gary A Kuleck; Gerard McNeil; Robert Moss; Jennifer L Myka; Alexis Nagengast; Robert Morris; Paul J Overvoorde; Elizabeth Shoop; Susan Parrish; Kelynne Reed; E Gloria Regisford; Dennis Revie; Anne G Rosenwald; Ken Saville; Stephanie Schroeder; Mary Shaw; Gary Skuse; Christopher Smith; Mary Smith; Eric P Spana; Mary Spratt; Joyce Stamm; Jeff S Thompson; Matthew Wawersik; Barbara A Wilson; Jim Youngblom; Wilson Leung; Jeremy Buhler; Elaine R Mardis; David Lopatto; Sarah C R Elgin
Journal:  CBE Life Sci Educ       Date:  2010       Impact factor: 3.325

4.  Classroom-based science research at the introductory level: changes in career choices and attitude.

Authors:  Melinda Harrison; David Dunbar; Lisa Ratmansky; Kimberly Boyd; David Lopatto
Journal:  CBE Life Sci Educ       Date:  2011       Impact factor: 3.325

5.  Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4.

Authors:  Welkin H Pope; Christina M Ferreira; Deborah Jacobs-Sera; Robert C Benjamin; Ariangela J Davis; Randall J DeJong; Sarah C R Elgin; Forrest R Guilfoile; Mark H Forsyth; Alexander D Harris; Samuel E Harvey; Lee E Hughes; Peter M Hynes; Arrykka S Jackson; Marilyn D Jalal; Elizabeth A MacMurray; Coreen M Manley; Molly J McDonough; Jordan L Mosier; Larissa J Osterbann; Hannah S Rabinowitz; Corwin N Rhyan; Daniel A Russell; Margaret S Saha; Christopher D Shaffer; Stephanie E Simon; Erika F Sims; Isabel G Tovar; Emilie G Weisser; John T Wertz; Kathleen A Weston-Hafer; Kurt E Williamson; Bo Zhang; Steven G Cresawn; Paras Jain; Mariana Piuri; William R Jacobs; Roger W Hendrix; Graham F Hatfull
Journal:  PLoS One       Date:  2011-10-28       Impact factor: 3.240

6.  Complete genome sequence of a mosaic bacteriophage, waukesha92.

Authors:  A Brooke Sauder; Brandon Carter; Christophe Langouet Astrie; Louise Temple
Journal:  Genome Announc       Date:  2014-08-21

7.  The undergraduate genomics research initiative.

Authors:  Cheryl A Kerfeld; Robert W Simons
Journal:  PLoS Biol       Date:  2007-05       Impact factor: 8.029

8.  Complete Genome of Bacillus pumilus Siphophage Glittering.

Authors:  Solomon P Matthew; Skyelar L Decker; Karthik R Chamakura; Gabriel F Kuty Everett
Journal:  Genome Announc       Date:  2013-12-05

9.  Complete Genome of Bacillus pumilus Siphophage Blastoid.

Authors:  Scott J Mash; Nicholas T Minahan; Karthik R Chamakura; Gabriel F Kuty Everett
Journal:  Genome Announc       Date:  2013-12-05

10.  Genomic comparison of 93 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity.

Authors:  Julianne H Grose; Garrett L Jensen; Sandra H Burnett; Donald P Breakwell
Journal:  BMC Genomics       Date:  2014-10-04       Impact factor: 3.969

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  1 in total

Review 1.  Breaking Symmetry in Viral Icosahedral Capsids as Seen through the Lenses of X-ray Crystallography and Cryo-Electron Microscopy.

Authors:  Kristin N Parent; Jason R Schrad; Gino Cingolani
Journal:  Viruses       Date:  2018-02-07       Impact factor: 5.048

  1 in total

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