Literature DB >> 26442176

Drawing a fine line on endogenous retroelement activity.

Nathaly Castro-Diaz1, Marc Friedli1, Didier Trono1.   

Abstract

Endogenous retroelements (EREs) are essential motors of evolution yet require careful control to prevent genomic catastrophes, notably during the vulnerable phases of epigenetic reprogramming that occur immediately after fertilization and in germ cells. Accordingly, a variety of mechanisms restrict these mobile genetic units. Previous studies have revealed the importance of KRAB-containing zinc finger proteins (KRAB-ZFPs) and their cofactor, KAP1, in the early embryonic silencing of endogenous retroviruses and so-called SVAs, but the implication of this transcriptional repression system in the control of LINE-1, the only known active autonomous retrotransposon in the human genome, was thought to be marginal. Two recent studies straighten the record by revealing that the KRAB/KAP system is key to the control of L1 in embryonic stem (ES) cells, and go further in demonstrating that DNA methylation and KRAB/KAP1-induced repression contribute to this process in an evolutionally dynamic fashion. These results shed light on the delicate equilibrium between higher vertebrates and endogenous retroelements, which are not just genetic invaders calling for strict control but rather a constantly renewed and nicely exploitable source of evolutionary potential.

Entities:  

Keywords:  ERE; KAP1; KRAB-ZFPs or KRAB-ZNFs; LINE-1 or L1; embryonic stem cells; endogenous retroelements; genome evolution; retrotransposition

Year:  2015        PMID: 26442176      PMCID: PMC4588521          DOI: 10.1080/2159256X.2015.1006109

Source DB:  PubMed          Journal:  Mob Genet Elements        ISSN: 2159-2543


  75 in total

1.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

2.  Human L1 retrotransposition: cis preference versus trans complementation.

Authors:  W Wei; N Gilbert; S L Ooi; J F Lawler; E M Ostertag; H H Kazazian; J D Boeke; J V Moran
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

3.  Human L1 element target-primed reverse transcription in vitro.

Authors:  Gregory J Cost; Qinghua Feng; Alain Jacquier; Jef D Boeke
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

4.  Human LINE retrotransposons generate processed pseudogenes.

Authors:  C Esnault; J Maestre; T Heidmann
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

5.  Gene regulation for higher cells: a theory.

Authors:  R J Britten; E H Davidson
Journal:  Science       Date:  1969-07-25       Impact factor: 47.728

Review 6.  Transposable elements as genetic regulatory substrates in early development.

Authors:  Wesley D Gifford; Samuel L Pfaff; Todd S Macfarlan
Journal:  Trends Cell Biol       Date:  2013-02-12       Impact factor: 20.808

Review 7.  Cytosine methylation and the ecology of intragenomic parasites.

Authors:  J A Yoder; C P Walsh; T H Bestor
Journal:  Trends Genet       Date:  1997-08       Impact factor: 11.639

Review 8.  Retroelements and the human genome: new perspectives on an old relation.

Authors:  Norbert Bannert; Reinhard Kurth
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-13       Impact factor: 11.205

9.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

10.  De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET.

Authors:  Helen M Rowe; Marc Friedli; Sandra Offner; Sonia Verp; Daniel Mesnard; Julien Marquis; Tugce Aktas; Didier Trono
Journal:  Development       Date:  2013-02-01       Impact factor: 6.868

View more
  8 in total

1.  On transposons and totipotency.

Authors:  Maria-Elena Torres-Padilla
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-10       Impact factor: 6.237

Review 2.  Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire.

Authors:  Peter J Thompson; Todd S Macfarlan; Matthew C Lorincz
Journal:  Mol Cell       Date:  2016-06-02       Impact factor: 17.970

3.  Transposable Elements Activity is Positively Related to Rate of Speciation in Mammals.

Authors:  Marco Ricci; Valentina Peona; Etienne Guichard; Cristian Taccioli; Alessio Boattini
Journal:  J Mol Evol       Date:  2018-05-31       Impact factor: 2.395

4.  TDP-43 regulates transcription at protein-coding genes and Alu retrotransposons.

Authors:  Andrés A Morera; Nasiha S Ahmed; Jacob C Schwartz
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-10-23       Impact factor: 6.304

Review 5.  Restricting retrotransposons: a review.

Authors:  John L Goodier
Journal:  Mob DNA       Date:  2016-08-11

Review 6.  Retrotransposon Domestication and Control in Dictyostelium discoideum.

Authors:  Marek Malicki; Maro Iliopoulou; Christian Hammann
Journal:  Front Microbiol       Date:  2017-10-05       Impact factor: 5.640

Review 7.  The complexity of TRIM28 contribution to cancer.

Authors:  Patrycja Czerwińska; Sylwia Mazurek; Maciej Wiznerowicz
Journal:  J Biomed Sci       Date:  2017-08-29       Impact factor: 8.410

8.  The RNA editing enzyme ADAR2 restricts L1 mobility.

Authors:  Loredana Frassinelli; Elisa Orecchini; Sofian Al-Wardat; Marco Tripodi; Carmine Mancone; Margherita Doria; Silvia Galardi; Silvia Anna Ciafrè; Alessandro Michienzi
Journal:  RNA Biol       Date:  2021-07-05       Impact factor: 4.652

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.