Literature DB >> 26439501

Genetic Tailors: CTCF and Cohesin Shape the Genome During Evolution.

Matteo Vietri Rudan1, Suzana Hadjur2.   

Abstract

Research into chromosome structure and organization is an old field that has seen some fascinating progress in recent years. Modern molecular methods that can describe the shape of chromosomes have begun to revolutionize our understanding of genome organization and the mechanisms that regulate gene activity. A picture is beginning to emerge of chromatin loops representing a widespread organizing principle of the chromatin fiber and the proteins cohesin and CCCTC-binding factor (CTCF) as key players anchoring such chromatin loops. Here we review our current understanding of the features of CTCF- and cohesin-mediated genome organization and how their evolution may have helped to shape genome structure.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26439501     DOI: 10.1016/j.tig.2015.09.004

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  29 in total

Review 1.  Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability.

Authors:  Gerson Rothschild; Uttiya Basu
Journal:  Trends Genet       Date:  2017-01-10       Impact factor: 11.639

2.  Epstein-Barr Virus Rta-Mediated Accumulation of DNA Methylation Interferes with CTCF Binding in both Host and Viral Genomes.

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Journal:  J Virol       Date:  2017-07-12       Impact factor: 5.103

Review 3.  Chromatin Domains: The Unit of Chromosome Organization.

Authors:  Jesse R Dixon; David U Gorkin; Bing Ren
Journal:  Mol Cell       Date:  2016-06-02       Impact factor: 17.970

Review 4.  Regulation of 3D Organization and Its Role in Cancer Biology.

Authors:  Anghui Peng; Wang Peng; Ruiqi Wang; Hao Zhao; Xinyang Yu; Yihao Sun
Journal:  Front Cell Dev Biol       Date:  2022-06-08

5.  The genetic factors of bilaterian evolution.

Authors:  Peter Heger; Wen Zheng; Anna Rottmann; Kristen A Panfilio; Thomas Wiehe
Journal:  Elife       Date:  2020-07-16       Impact factor: 8.140

6.  The BEN Domain Protein Insensitive Binds to the Fab-7 Chromatin Boundary To Establish Proper Segmental Identity in Drosophila.

Authors:  Anna Fedotova; Tsutomu Aoki; Mikaël Rossier; Rakesh Kumar Mishra; Chaevia Clendinen; Olga Kyrchanova; Daniel Wolle; Artem Bonchuk; Robert K Maeda; Annick Mutero; Fabienne Cleard; Vladic Mogila; François Karch; Pavel Georgiev; Paul Schedl
Journal:  Genetics       Date:  2018-08-06       Impact factor: 4.562

7.  A hominid-specific shift in cerebellar expression, upstream retrotransposons, and a potential cis-regulatory mechanism: bioinformatics analyses of the mu-opioid receptor gene.

Authors:  Orna Levran; Eran Even-Tov; Li Zhao
Journal:  Heredity (Edinb)       Date:  2019-11-11       Impact factor: 3.821

Review 8.  Regulatory Enhancer-Core-Promoter Communication via Transcription Factors and Cofactors.

Authors:  Muhammad A Zabidi; Alexander Stark
Journal:  Trends Genet       Date:  2016-11-02       Impact factor: 11.639

Review 9.  CTCF: making the right connections.

Authors:  Rodolfo Ghirlando; Gary Felsenfeld
Journal:  Genes Dev       Date:  2016-04-15       Impact factor: 11.361

10.  RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.

Authors:  A Rasim Barutcu; Deli Hong; Bryan R Lajoie; Rachel Patton McCord; Andre J van Wijnen; Jane B Lian; Janet L Stein; Job Dekker; Anthony N Imbalzano; Gary S Stein
Journal:  Biochim Biophys Acta       Date:  2016-08-09
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