| Literature DB >> 26437765 |
Abdelsalam Saleh1, Maria G Stathopoulou2, Sébastien Dadé3, Ndeye Coumba Ndiaye4, Mohsen Azimi-Nezhad5,6, Helena Murray7, Christine Masson8, John Lamont9, Peter Fitzgerald10, Sophie Visvikis-Siest11,12.
Abstract
BACKGROUND: Vascular endothelial growth factor (VEGF) plays a key role in angiogenesis. The aim was to assess the genetic connections between the angiogenesis-related NOS3, CD14, MMP3, IL4R, IL4 genes and VEGF expression and plasma levels.Entities:
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Year: 2015 PMID: 26437765 PMCID: PMC4594922 DOI: 10.1186/s12881-015-0234-6
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Characteristics of the studied polymorphisms
| Chromosome | SNPs | Minor allele | Common allele | Closed to/on gene | Minor allele Frequency | HWE a |
|---|---|---|---|---|---|---|
| 5 | rs2569190 | G | A | CD14 molecule | 0.48 | 0.8332 |
| 5 | rs2243250 | T | C | IL4 interleukin 4 | 0.15 | 0.6865 |
| 6 | rs4416670 | C | C | MGC45491 and MRPL14 (near VEGF) | 0.47 | 0.5489 |
| 6 | rs2010963 | C | G | VEGFA | 0.35 | 0.3243 |
| 6 | rs6921438 | A | G | MGC45491 and MRPL14 (near VEGF) | 0.4 | 1 |
| 7 | rs3918226 | T | C | NOS3 nitric oxide synthase 3 | 0.09 | 0.3379 |
| 7 | rs1799983 | T | G | NOS3 nitric oxide synthase 3 | 0.35 | 0.7309 |
| 7 | rs1800779 | G | A | NOS3 nitric oxide synthase 3 | 0.4 | 0.6624 |
| 8 | rs6993770 | T | A | ZFPM2 | 0.28 | 0.9019 |
| 9 | rs10738760 | G | A | VLDLR and KCNV2 | 0.48 | 0.9205 |
| 11 | rs3025058 | - | T | MMP3 matrix metallopeptidase 3 | 0.48 | 1 |
| 16 | rs1805015 | C | T | IL4R interleukin 4 receptor | 0.13 | 0.3821 |
| 16 | rs1801275 | G | A | IL4R interleukin 4 receptor | 0.18 | 0.8632 |
aHardy Weinberg Equilibrium
Fig. 1Schematic organisation of eNOS3 transcripts in chromosome 7. Rs1799983 is indicated with the orange triangle. Exons are represented by rectangular shapes and coding exons are coloured
Characteristics of study population (n = 403)
| Variable | Meana | SDb |
|---|---|---|
| Age (years) | 44.4 | 4.8 |
| Gender (%) male | 50.4 | |
| Body mass index (kg/m2) | 24.9 | 3.9 |
| Vascular endothelial growth factor (pg/ml) | 42.7 | 43.3 |
| Total cholesterol (mmol/l) | 5.7 | 1.0 |
| Triglycerides (mmol/l) | 1.3 | 1.2 |
| High- density lipoprotein (mmol/l) | 1.6 | 0.4 |
| Low-density lipoprotein (mmol/l) | 3.5 | 0.8 |
| Obesity (%) | 7.9 % | |
| Smoking (%) | 25.4 % | |
| Hypertension (%) | 5.7 % |
aMean values for continuous variables and percentages for categorical variables
bSD standard deviation
Epistatic interactions for VEGF plasma levels
| SNP × SNP | Genes |
|
| |
|---|---|---|---|---|
| rs1800779 × rs2569190 | −0.07 | −2.04 | 0.042 | |
| rs1800779 × rs3918226 | +0.17 | 2.29 | 0.022 | |
| rs1801275 × rs6921438 | +0.08 | 2.043 | 0.042 | |
| rs1801275 × rs3025058 | −0.10 | −2.58 | 0.010 | |
| rs2569190 × rs3025058 | +0.07 | 2.36 | 0.019 |
a β, effect size
Significant gene x environment interactions with VEGF plasma levels
| Interaction | Gene | β a(pg/ml) |
|
|
|---|---|---|---|---|
| rs1800779 × HDL-C | NOS3 | 0.12 | 2.78 | 0.005 |
| rs1800779 × Triglycerides | NOS3 | −0.04 | −1.98 | 0.043 |
| rs1800779 × Obesity | NOS3 | −0.11 | −2.36 | 0.018 |
| rs6921438 × Hypertention | MGC45491 and MRPL14(near | −0.18 | −2.20 | 0.028 |
a β, effect size
Fig. 2Domains’ organisation of human eNOS3 enzyme. Position of rs1799983 is indicated (Glu298Asp). NA: NADP-nucleotide phosphate-binding region, Cal: calmodulin-binding-region
Fig. 3Representation of the dimeric form of eNOS3 oxygenase domains (PDB : 1M9M). Chain A is in green and chain B is represented in cyan for alpha helix and magenta for beta strands. Glu298Asp corresponding to rs1799983, is depicted in red in each chain
Fig. 4Representation of solvent-accessible surface area of eNOS3 homodimer oxygenase domains (PDB :1M9M). Chain A and B are in green and cyan respectively. Glu298 is coloured in magenta in both chains
Fig. 5NOS3 Glu298 [1m9m]
Fig. 6Homodimer NOS3 Asp98 (cyan)