Literature DB >> 26437245

Ensemble Methods Enable a New Definition for the Solution to Gas-Phase Transfer of Intrinsically Disordered Proteins.

Antoni J Borysik1, Denes Kovacs2, Mainak Guharoy2, Peter Tompa2,3.   

Abstract

Intrinsically disordered proteins (IDPs) are important for health and disease, yet their lack of net structure precludes an understanding of their function using classical methods. Gas-phase techniques provide a promising alternative to access information on the structure and dynamics of IDPs, but the fidelity to which these methods reflect the solution conformations of these proteins has been difficult to ascertain. Here we use state of the art ensemble techniques to investigate the solution to gas-phase transfer of a range of different IDPs. We show that IDPs undergo a vast conformational space expansion in the absence of solvent to sample a conformational space 3-5 fold broader than in solution. Moreover, we show that this process is coupled to the electrospray ionization process, which brings about the generation of additional subpopulations for these proteins not observed in solution due to competing effects on protein charge and shape. Ensemble methods have permitted a new definition of the solution to gas-phase transfer of IDPs and provide a roadmap for future investigations into flexible systems by mass spectrometry.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26437245     DOI: 10.1021/jacs.5b06027

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Computational Insights into Compaction of Gas-Phase Protein and Protein Complex Ions in Native Ion Mobility-Mass Spectrometry.

Authors:  Amber D Rolland; James S Prell
Journal:  Trends Analyt Chem       Date:  2019-04-30       Impact factor: 12.296

Review 2.  Are Charge-State Distributions a Reliable Tool Describing Molecular Ensembles of Intrinsically Disordered Proteins by Native MS?

Authors:  Antonino Natalello; Carlo Santambrogio; Rita Grandori
Journal:  J Am Soc Mass Spectrom       Date:  2016-10-11       Impact factor: 3.109

3.  Conformational Space and Stability of ETD Charge Reduction Products of Ubiquitin.

Authors:  Frederik Lermyte; Mateusz Krzysztof Łącki; Dirk Valkenborg; Anna Gambin; Frank Sobott
Journal:  J Am Soc Mass Spectrom       Date:  2016-08-05       Impact factor: 3.109

4.  Monitoring Conformational Landscape of Ovine Prion Protein Monomer Using Ion Mobility Coupled to Mass Spectrometry.

Authors:  Guillaume Van der Rest; Human Rezaei; Frédéric Halgand
Journal:  J Am Soc Mass Spectrom       Date:  2016-10-18       Impact factor: 3.109

5.  Structural mass spectrometry decodes domain interaction and dynamics of the full-length Human Histone Deacetylase 2.

Authors:  Zoja Soloviev; Joshua M A Bullock; Juliette M B James; Andrea C Sauerwein; Joanne E Nettleship; Raymond J Owens; D Flemming Hansen; Maya Topf; Konstantinos Thalassinos
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2022-01-18       Impact factor: 3.036

Review 6.  Generating Ensembles of Dynamic Misfolding Proteins.

Authors:  Theodoros K Karamanos; Arnout P Kalverda; Sheena E Radford
Journal:  Front Neurosci       Date:  2022-03-31       Impact factor: 4.677

7.  DisProt 7.0: a major update of the database of disordered proteins.

Authors:  Damiano Piovesan; Francesco Tabaro; Ivan Mičetić; Marco Necci; Federica Quaglia; Christopher J Oldfield; Maria Cristina Aspromonte; Norman E Davey; Radoslav Davidović; Zsuzsanna Dosztányi; Arne Elofsson; Alessandra Gasparini; András Hatos; Andrey V Kajava; Lajos Kalmar; Emanuela Leonardi; Tamas Lazar; Sandra Macedo-Ribeiro; Mauricio Macossay-Castillo; Attila Meszaros; Giovanni Minervini; Nikoletta Murvai; Jordi Pujols; Daniel B Roche; Edoardo Salladini; Eva Schad; Antoine Schramm; Beata Szabo; Agnes Tantos; Fiorella Tonello; Konstantinos D Tsirigos; Nevena Veljković; Salvador Ventura; Wim Vranken; Per Warholm; Vladimir N Uversky; A Keith Dunker; Sonia Longhi; Peter Tompa; Silvio C E Tosatto
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

8.  Ion Mobility Mass Spectrometry Uncovers the Impact of the Patterning of Oppositely Charged Residues on the Conformational Distributions of Intrinsically Disordered Proteins.

Authors:  Rebecca Beveridge; Lukasz G Migas; Rahul K Das; Rohit V Pappu; Richard W Kriwacki; Perdita E Barran
Journal:  J Am Chem Soc       Date:  2019-03-12       Impact factor: 15.419

9.  Depicting Conformational Ensembles of α-Synuclein by Single Molecule Force Spectroscopy and Native Mass Spectroscopy.

Authors:  Roberta Corti; Claudia A Marrano; Domenico Salerno; Stefania Brocca; Antonino Natalello; Carlo Santambrogio; Giuseppe Legname; Francesco Mantegazza; Rita Grandori; Valeria Cassina
Journal:  Int J Mol Sci       Date:  2019-10-19       Impact factor: 5.923

10.  Metal ions shape α-synuclein.

Authors:  Rani Moons; Albert Konijnenberg; Carl Mensch; Roos Van Elzen; Christian Johannessen; Stuart Maudsley; Anne-Marie Lambeir; Frank Sobott
Journal:  Sci Rep       Date:  2020-10-01       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.