| Literature DB >> 26434508 |
Shivakumar Keerthikumar1, David Chisanga2, Dinuka Ariyaratne3, Haidar Al Saffar3, Sushma Anand3, Kening Zhao3, Monisha Samuel4, Mohashin Pathan3, Markandeya Jois4, Naveen Chilamkurti2, Lahiru Gangoda3, Suresh Mathivanan5.
Abstract
Exosomes are membranous vesicles that are released by a variety of cells into the extracellular microenvironment and are implicated in intercellular communication. As exosomes contain RNA, proteins and lipids, there is a significant interest in characterizing the molecular cargo of exosomes. Here, we describe ExoCarta (http://www.exocarta.org), a manually curated Web-based compendium of exosomal proteins, RNAs and lipids. Since its inception, the database has been highly accessed (>54,000 visitors from 135 countries). The current version of ExoCarta hosts 41,860 proteins, >7540 RNA and 1116 lipid molecules from more than 286 exosomal studies annotated with International Society for Extracellular Vesicles minimal experimental requirements for definition of extracellular vesicles. Besides, ExoCarta features dynamic protein-protein interaction networks and biological pathways of exosomal proteins. Users can download most often identified exosomal proteins based on the number of studies. The downloaded files can further be imported directly into FunRich (http://www.funrich.org) tool for additional functional enrichment and interaction network analysis.Entities:
Keywords: FunRich; exosomes; extracellular vesicles; protein–protein interactions
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Year: 2015 PMID: 26434508 PMCID: PMC4783248 DOI: 10.1016/j.jmb.2015.09.019
Source DB: PubMed Journal: J Mol Biol ISSN: 0022-2836 Impact factor: 5.469