Literature DB >> 26434508

ExoCarta: A Web-Based Compendium of Exosomal Cargo.

Shivakumar Keerthikumar1, David Chisanga2, Dinuka Ariyaratne3, Haidar Al Saffar3, Sushma Anand3, Kening Zhao3, Monisha Samuel4, Mohashin Pathan3, Markandeya Jois4, Naveen Chilamkurti2, Lahiru Gangoda3, Suresh Mathivanan5.   

Abstract

Exosomes are membranous vesicles that are released by a variety of cells into the extracellular microenvironment and are implicated in intercellular communication. As exosomes contain RNA, proteins and lipids, there is a significant interest in characterizing the molecular cargo of exosomes. Here, we describe ExoCarta (http://www.exocarta.org), a manually curated Web-based compendium of exosomal proteins, RNAs and lipids. Since its inception, the database has been highly accessed (>54,000 visitors from 135 countries). The current version of ExoCarta hosts 41,860 proteins, >7540 RNA and 1116 lipid molecules from more than 286 exosomal studies annotated with International Society for Extracellular Vesicles minimal experimental requirements for definition of extracellular vesicles. Besides, ExoCarta features dynamic protein-protein interaction networks and biological pathways of exosomal proteins. Users can download most often identified exosomal proteins based on the number of studies. The downloaded files can further be imported directly into FunRich (http://www.funrich.org) tool for additional functional enrichment and interaction network analysis.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  FunRich; exosomes; extracellular vesicles; protein–protein interactions

Mesh:

Substances:

Year:  2015        PMID: 26434508      PMCID: PMC4783248          DOI: 10.1016/j.jmb.2015.09.019

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  26 in total

Review 1.  Exosomes in bodily fluids are a highly stable resource of disease biomarkers.

Authors:  Stephanie Boukouris; Suresh Mathivanan
Journal:  Proteomics Clin Appl       Date:  2015-03-19       Impact factor: 3.494

Review 2.  Extracellular vesicles including exosomes are mediators of signal transduction: are they protective or pathogenic?

Authors:  Lahiru Gangoda; Stephanie Boukouris; Michael Liem; Hina Kalra; Suresh Mathivanan
Journal:  Proteomics       Date:  2014-12-18       Impact factor: 3.984

3.  ExoCarta 2012: database of exosomal proteins, RNA and lipids.

Authors:  Suresh Mathivanan; Cassie J Fahner; Gavin E Reid; Richard J Simpson
Journal:  Nucleic Acids Res       Date:  2011-10-11       Impact factor: 16.971

4.  The BioGRID interaction database: 2015 update.

Authors:  Andrew Chatr-Aryamontri; Bobby-Joe Breitkreutz; Rose Oughtred; Lorrie Boucher; Sven Heinicke; Daici Chen; Chris Stark; Ashton Breitkreutz; Nadine Kolas; Lara O'Donnell; Teresa Reguly; Julie Nixon; Lindsay Ramage; Andrew Winter; Adnane Sellam; Christie Chang; Jodi Hirschman; Chandra Theesfeld; Jennifer Rust; Michael S Livstone; Kara Dolinski; Mike Tyers
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 19.160

5.  Proteogenomic analysis reveals exosomes are more oncogenic than ectosomes.

Authors:  Shivakumar Keerthikumar; Lahiru Gangoda; Michael Liem; Pamali Fonseka; Ishara Atukorala; Cemil Ozcitti; Adam Mechler; Christopher G Adda; Ching-Seng Ang; Suresh Mathivanan
Journal:  Oncotarget       Date:  2015-06-20

6.  Large oncosomes contain distinct protein cargo and represent a separate functional class of tumor-derived extracellular vesicles.

Authors:  Valentina R Minciacchi; Sungyong You; Cristiana Spinelli; Samantha Morley; Mandana Zandian; Paul-Joseph Aspuria; Lorenzo Cavallini; Chiara Ciardiello; Mariana Reis Sobreiro; Matteo Morello; Geetanjali Kharmate; Su Chul Jang; Dae-Kyum Kim; Elham Hosseini-Beheshti; Emma Tomlinson Guns; Martin Gleave; Yong Song Gho; Suresh Mathivanan; Wei Yang; Michael R Freeman; Dolores Di Vizio
Journal:  Oncotarget       Date:  2015-05-10

7.  COSMIC: exploring the world's knowledge of somatic mutations in human cancer.

Authors:  Simon A Forbes; David Beare; Prasad Gunasekaran; Kenric Leung; Nidhi Bindal; Harry Boutselakis; Minjie Ding; Sally Bamford; Charlotte Cole; Sari Ward; Chai Yin Kok; Mingming Jia; Tisham De; Jon W Teague; Michael R Stratton; Ultan McDermott; Peter J Campbell
Journal:  Nucleic Acids Res       Date:  2014-10-29       Impact factor: 16.971

Review 8.  Extracellular vesicles: exosomes, microvesicles, and friends.

Authors:  Graça Raposo; Willem Stoorvogel
Journal:  J Cell Biol       Date:  2013-02-18       Impact factor: 10.539

9.  Extracellular vesicles including exosomes in cross kingdom regulation: a viewpoint from plant-fungal interactions.

Authors:  Monisha Samuel; Mark Bleackley; Marilyn Anderson; Suresh Mathivanan
Journal:  Front Plant Sci       Date:  2015-09-23       Impact factor: 5.753

10.  The Reactome pathway knowledgebase.

Authors:  David Croft; Antonio Fabregat Mundo; Robin Haw; Marija Milacic; Joel Weiser; Guanming Wu; Michael Caudy; Phani Garapati; Marc Gillespie; Maulik R Kamdar; Bijay Jassal; Steven Jupe; Lisa Matthews; Bruce May; Stanislav Palatnik; Karen Rothfels; Veronica Shamovsky; Heeyeon Song; Mark Williams; Ewan Birney; Henning Hermjakob; Lincoln Stein; Peter D'Eustachio
Journal:  Nucleic Acids Res       Date:  2013-11-15       Impact factor: 16.971

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  415 in total

1.  Human pancreatic cancer cell exosomes, but not human normal cell exosomes, act as an initiator in cell transformation.

Authors:  Karoliina Stefanius; Kelly Servage; Marcela de Souza Santos; Hillery Fields Gray; Jason E Toombs; Suneeta Chimalapati; Min S Kim; Venkat S Malladi; Rolf Brekken; Kim Orth
Journal:  Elife       Date:  2019-05-28       Impact factor: 8.140

Review 2.  Emerging roles of extracellular vesicles in neurodegenerative disorders.

Authors:  Yang You; Tsuneya Ikezu
Journal:  Neurobiol Dis       Date:  2019-06-20       Impact factor: 5.996

3.  Proteomic Profiling of Exosomes Derived from Plasma of HIV-Infected Alcohol Drinkers and Cigarette Smokers.

Authors:  Sunitha Kodidela; Yujie Wang; Benjamin J Patters; Yuqing Gong; Namita Sinha; Sabina Ranjit; Kelli Gerth; Sanjana Haque; Theodore Cory; Carole McArthur; Anil Kumar; Jim Y Wan; Santosh Kumar
Journal:  J Neuroimmune Pharmacol       Date:  2019-05-08       Impact factor: 4.147

Review 4.  Mesenchymal stem/stromal cell-derived exosomes in regenerative medicine and cancer; overview of development, challenges, and opportunities.

Authors:  Ali Hassanzadeh; Heshu Sulaiman Rahman; Alexander Markov; Judi Januadi Endjun; Angelina Olegovna Zekiy; Max Stanley Chartrand; Nasrin Beheshtkhoo; Mohammad Amin Jadidi Kouhbanani; Faroogh Marofi; Marzieh Nikoo; Mostafa Jarahian
Journal:  Stem Cell Res Ther       Date:  2021-05-21       Impact factor: 6.832

5.  Shedding Perspective on Extracellular Vesicle Biology in Diabetes and Associated Metabolic Syndromes.

Authors:  Naureen Javeed
Journal:  Endocrinology       Date:  2019-02-01       Impact factor: 4.736

6.  Charge Detection Mass Spectrometry Measurements of Exosomes and other Extracellular Particles Enriched from Bovine Milk.

Authors:  Brooke A Brown; Xuyao Zeng; Aaron R Todd; Lauren F Barnes; Jonathan M A Winstone; Jonathan C Trinidad; Milos V Novotny; Martin F Jarrold; David E Clemmer
Journal:  Anal Chem       Date:  2020-02-07       Impact factor: 6.986

7.  Characterization of Regulatory Extracellular Vesicles from Osteoclasts.

Authors:  N Huynh; L VonMoss; D Smith; I Rahman; M F Felemban; J Zuo; W J Rody; K P McHugh; L S Holliday
Journal:  J Dent Res       Date:  2016-02-23       Impact factor: 6.116

8.  ALIX increases protein content and protective function of iPSC-derived exosomes.

Authors:  Ruiting Sun; Yingying Liu; Meng Lu; Qianqian Ding; Pingping Wang; Heng Zhang; Xiaoyu Tian; Peng Lu; Dan Meng; Ning Sun; Meng Xiang; Sifeng Chen
Journal:  J Mol Med (Berl)       Date:  2019-04-03       Impact factor: 4.599

Review 9.  Tumor exosomes: a double-edged sword in cancer therapy.

Authors:  Wei Sun; Ju-Dong Luo; Hua Jiang; Dayue Darrel Duan
Journal:  Acta Pharmacol Sin       Date:  2018-03-15       Impact factor: 6.150

10.  Exosome-Mediated Crosstalk between Keratinocytes and Macrophages in Cutaneous Wound Healing.

Authors:  Xiaoju Zhou; Brooke A Brown; Amanda P Siegel; Mohamed S El Masry; Xuyao Zeng; Woran Song; Amitava Das; Puneet Khandelwal; Andrew Clark; Kanhaiya Singh; Poornachander R Guda; Mahadeo Gorain; Lava Timsina; Yi Xuan; Stephen C Jacobson; Milos V Novotny; Sashwati Roy; Mangilal Agarwal; Robert J Lee; Chandan K Sen; David E Clemmer; Subhadip Ghatak
Journal:  ACS Nano       Date:  2020-09-25       Impact factor: 15.881

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