| Literature DB >> 26433958 |
Maria Nowacka-Zawisza1, Ewa Forma2, Maciej Walczak2, Waldemar Różański3, Magdalena Bryś2, Wanda M Krajewska2.
Abstract
Although prostate cancer is one of the most common cancers in men, the genetic defects underlying its pathogenesis remain poorly understood. DNA damage repair mechanisms have been implicated in human cancer. Accumulating evidence indicates that the fidelity of the response to DNA double-strand breaks is critical for maintaining genome integrity. RAD51 is a central player in double-strand break repair via homologous recombination, and its alterations may confer and increase the risk of cancer. RAD51 functioning depends on the indirect or direct interactions with BRCA1 and BRCA2. To evaluate the contribution of RAD51 to sporadic prostate cancer, loss of heterozygosity (LOH) for chromosomal region 15q14-21.1 (RAD51 locus) was determined and compared to LOH in 17q21.31 (BRCA1 locus) and 13q12.3-13.1 (BRCA2 region). DNA was isolated from prostate biopsies and matched peripheral blood of 50 patients. The regions 15q14-21.1, 17q21.31, and 13q12.3-13.1 were examined using microsatellite markers on chromosome 15 (D15S118, D15S214, D15S1006), chromosome 17 (D17S855, D17S1323), and chromosome 13 (D13S260, D13S290), respectively. The LOH in tumors was analyzed by PCR with fluorescently labeled primers and an ABI PRISM 377 DNA Sequencer. Allele sizing was determined by GeneScan version 3.1.2 and Genotyper version 2.5 software (Applied Biosystems, USA). LOH was identified in 57.5, 23, and 40 % for chromosomal regions 15q14-21.1, 17q21.31, and 13q12.3-13.1, respectively. Twenty-six percent of studied cases manifested LOH for at least one marker in 15q14-21.1 exclusively. A significant correlation was found between LOH for studied region and PSAD (prostate-specific antigen density). The findings suggest that RAD51 may be considered as a prostate cancer susceptibility gene.Entities:
Keywords: Loss of heterozygosity (LOH); Molecular markers; Prostate cancer; RAD51
Mesh:
Substances:
Year: 2015 PMID: 26433958 PMCID: PMC4592700 DOI: 10.1007/s12032-015-0691-y
Source DB: PubMed Journal: Med Oncol ISSN: 1357-0560 Impact factor: 3.064
Clinical characteristics of study subjects
| Age (year) | |
| Range | 55–86 |
| Mean ± SD | 71.2 ± 8.6 |
| Median | 72 |
| <72 | 24 (48 %) |
| ≥72 | 26 (52 %) |
| PSAT (ng/ml) | |
| Range | 4.58–1489 |
| Mean ± SD | 104.04 ± 251.28 |
| Median | 17.37 |
| ≥4–10 | 15 (30 %) |
| ≥10–20 | 11 (22 %) |
| >20 | 24 (48 %) |
| PSAF/PSAT | |
| Range | 0.05–0.79 |
| Mean ± SD | 0.19 ± 0.13 |
| Median | 0.16 |
| <0.16 | 24 (48 %) |
| ≥0.16 | 26 (52 %) |
| PSAD (ng/ml) | |
| Range | 0.08–56.4 |
| Mean ± SD | 2.72 ± 8.51 |
| Median | 0.29 |
| <0.15 | 8 (16 %) |
| ≥0.15 | 42 (84 %) |
| Prostate volume (ml) | |
| Range | 20.7–191 |
| Mean ± SD | 57.72 ± 35.91 |
| Median | 47.25 |
| <50 | 28 (56 %) |
| ≥50 | 22 (44 %) |
| Gleason score | |
| 4 | 2 (4 %) |
| 6 | 9 (18 %) |
| 7 | 18 (36 %) |
| 8 | 11 (22 %) |
| 9 | 9 (18 %) |
| 10 | 1 (2 %) |
| Cancer stage | |
| T1 | 12 (24 %) |
| T2 | 14 (28 %) |
| T3 | 12 (24 %) |
| T4 | 12 (24 %) |
Characteristics of the analyzed microsatellite markers and PCR reaction (http://www.ncbi.nlm.nih.gov)
| Microsatellite marker | Chromosomal region (gene) | Position | Primer sequence | Dye | Product sizes (bp) |
|---|---|---|---|---|---|
| D15S118 | 15q14 | 12 996 879 | (+) TCAAAGACCCATATCAACCA | 6-FAM | 218–232 |
| (–) GTGCTGAAAAGCGACACTTA | |||||
| D15S214 | 15q15.1 ( | 17 166 170 | (+) GGAGGGCACTTCCTGAG | TET | 260–274 |
| (–) GCCTGGCATCACGACT | |||||
| D15S1006 | 15q21.1 | 24 439 646 | (+) AGGGAATACTTCAAAACTC | 6-FAM | 212–224 |
| (–) CCACTTGGCTATGGTGAAT | |||||
| D17S855 | 17q21.31 ( | 37 861 601 | (+) GGATGGCCTTTTAGAAAGTGG | 6-FAM | 142–156 |
| (–) ACACAGACTTGTCCTACTGCC | |||||
| D17S1323 | 37 894 900 | (+) TAGGAGATGGATTATTGGTG | TET | 153–161 | |
| (–) AAGCAACTTTGCAATGAGTG | |||||
| D13S260 | 13q12-13 ( | 13 503 800 | (+) AGATATTGTCTCCGTTCCATGA | 6-FAM | 155–171 |
| (–) CCCAGATATAAGGACCTGGCTA | |||||
| D13S290 | 12 495 878 | (+) CCTTAGGCCCCATAATCT | TET | 176–190 | |
| (–) CAAATTCCTCAATTGCAAAAT |
Fig. 1Example of LOH analysis for 13q12-13 region in prostate cancer
Frequency of LOH in prostate cancer for studied microsatellite markers
| Sample no. | D15S118 | D15S214 | D15S1006 | D17S855 | D17S1323 | D13S260 | D13S290 | FAL index |
|---|---|---|---|---|---|---|---|---|
| 1 | ni | ni | ni | NG | NG | NG | ni | 0 |
| 2 | NG | NG | NG | ni | NG | ni | NG | 0 |
| 3 | ni | ni | ni | NG | ni | LOH | LOH | 0.667 |
| 4 | NG | LOH | NG | ni | ni | ni | ni | 0.333 |
| 5 | ni | LOH | NG | NG | ni | NG | NG | 0.5 |
| 6 | ni | ni | NG | ni | ni | NG | LOH | 0.5 |
| 7 | ni | LOH | ni | ni | NG | ni | ni | 0 |
| 8 | NG | LOH | LOH | ni | NG | ni | ni | 0.667 |
| 9 | ni | ni | NG | ni | ni | NG | ni | 0 |
| 10 | NG | ni | ni | ni | ni | ni | NG | 0.5 |
| 11 | NG | ni | ni | ni | ni | NG | ni | 0.667 |
| 12 | ni | LOH | ni | ni | NG | LOH | ni | 1 |
| 13 | NG | NG | ni | NG | ni | LOH | ni | 0.4 |
| 14 | ni | ni | ni | NG | ni | ni | ni | 0.6 |
| 15 | ni | ni | ni | NG | ni | ni | NG | 0.333 |
| 16 | NG | ni | ni | ni | ni | ni | ni | 0.2 |
| 17 | NG | ni | ni | ni | ni | LOH | ni | 0 |
| 18 | ni | ni | LOH | ni | ni | LOH | ni | 1 |
| 19 | LOH | LOH | ni | ni | NG | ni | ni | 0 |
| 20 | ni | ni | ni | NG | ni | NG | ni | 0.5 |
| 21 | ni | NG | ni | ni | ni | ni | LOH | 0 |
| 22 | ni | ni | ni | ni | ni | NG | NG | 1 |
| 23 | NG | LOH | ni | ni | NG | NG | ni | 0 |
| 24 | NG | LOH | ni | ni | ni | LOH | ni | 0 |
| 25 | LOH | LOH | ni | LOH | ni | LOH | ni | 0.75 |
| 26 | NG | LOH | ni | ni | ni | ni | NG | 0 |
| 27 | NG | ni | ni | LOH | NG | ni | ni | 0 |
| 28 | LOH | NG | ni | LOH | ni | ni | ni | 0 |
| 29 | ni | LOH | ni | ni | ni | ni | ni | 0.5 |
| 30 | ni | ni | ni | NG | ni | ni | NG | 0.5 |
| 31 | LOH | ni | ni | NG | ni | LOH | LOH | 0.5 |
| 32 | LOH | ni | LOH | NG | ni | ni | ni | 0 |
| 33 | LOH | NG | ni | ni | ni | ni | ni | 0.667 |
| 34 | LOH | LOH | ni | NG | ni | NG | NG | 1 |
| 35 | LOH | NG | ni | LOH | ni | NG | LOH | 0.75 |
| 36 | ni | ni | ni | ni | ni | NG | NG | 0.25 |
| 37 | NG | ni | ni | NG | NG | ni | ni | 0 |
| 38 | NG | ni | ni | ni | NG | NG | LOH | 0 |
| 39 | ni | ni | ni | ni | LOH | NG | ni | 0 |
| 40 | ni | LOH | ni | ni | NG | ni | ni | 0.25 |
| 41 | NG | LOH | NG | LOH | NG | NG | ni | 0 |
| 42 | ni | NG | ni | ni | ni | NG | NG | 0.5 |
| 43 | ni | NG | ni | NG | ni | NG | NG | 0.25 |
| 44 | ni | LOH | ni | ni | ni | ni | ni | 0.333 |
| 45 | ni | NG | LOH | ni | ni | NG | LOH | 0.333 |
| 46 | ni | ni | NG | ni | ni | ni | ni | 0.667 |
| 47 | ni | ni | ni | ni | ni | NG | NG | 0 |
| 48 | LOH | ni | ni | NG | LOH | Ni | LOH | 0.667 |
| 49 | ni | NG | NG | ni | NG | NG | ni | 0 |
| 50 | ni | ni | NG | NG | NG | ni | NG | 0.333 |
LOH loss of heterozygosity, NG heterozygous without LOH, ni non-informative cases (homozygous)
Incidence of LOH at 15q14-21.1, 17q21.31, and 13q12-13 chromosomal regions in prostate cancer
| Chromosomal region | Number of informative case/studied cases (%) | Number of tumor with LOH/informative cases (%) |
|---|---|---|
| 15q14-21.1 | 40/50 (80 %) | 23/40 (57.5 %) |
| 17q21.31 | 30/50 (60 %) | 7/30 (23 %) |
| 13q12.3-13.1 | 35/50 (70 %) | 14/35 (40 %) |
Relationship between LOH at 15q14-21.1, 17q21.31, and 13q12-13 regions and the clinicopathological characteristics of prostate cancer
| Clinical characteristics | Chromosomal region | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15q14-21.1 | 17q21.31 | 13q12.3-13.1 | ||||||||||
|
|
| LOH |
|
|
| LOH |
|
|
| LOH |
| |
| Tumor cases | 40 | 17 | 23 | 30 | 23 | 7 | 35 | 21 | 14 | |||
| Age | ||||||||||||
| <72 | 18 | 7 | 11 | 0.755 | 16 | 11 | 5 | 0.399 | 21 | 13 | 8 | >0.999 |
| ≥72 | 22 | 10 | 12 | 14 | 12 | 2 | 14 | 8 | 6 | |||
| PSAT (ng/ml) | ||||||||||||
| ≥4–10 | 14 | 6 | 8 | 0.088 | 8 | 7 | 1 | 0.284 | 11 | 5 | 6 | 0.383 |
| >10–20 | 6 | 5 | 1 | 5 | 5 | 0 | 9 | 7 | 2 | |||
| >20 | 20 | 6 | 14 | 17 | 11 | 6 | 15 | 9 | 6 | |||
| PSAF/PSAT | ||||||||||||
| <0.16 | 18 | 7 | 11 | 0.755 | 15 | 13 | 2 | 0.390 | 17 | 11 | 6 | 0.733 |
| ≥0.16 | 22 | 10 | 12 | 15 | 10 | 5 | 18 | 10 | 8 | |||
| PSAD (ng/ml) | ||||||||||||
| <0.15 | 8 | 2 | 6 | 0.049 | 7 | 4 | 3 | 0.306 | 7 | 1 | 6 | 0.001 |
| ≥0.15 | 32 | 15 | 17 | 23 | 19 | 4 | 28 | 20 | 8 | |||
| Prostate volume (ml) | ||||||||||||
| <50 | 22 | 11 | 11 | 0.348 | 14 | 11 | 3 | >0.999 | 21 | 16 | 5 | 0.033 |
| ≥50 | 18 | 6 | 12 | 16 | 12 | 4 | 14 | 5 | 9 | |||
| Gleason score | ||||||||||||
| <7 | 15 | 7 | 8 | 0.749 | 6 | 4 | 2 | 0.603 | 10 | 6 | 4 | >0.999 |
| ≥7 | 25 | 10 | 15 | 24 | 19 | 5 | 25 | 15 | 10 | |||
| Cancer stage | ||||||||||||
| T1–T2 | 21 | 8 | 13 | 0.749 | 13 | 11 | 2 | 0.427 | 19 | 11 | 8 | >0.999 |
| T3–T4 | 19 | 9 | 10 | 17 | 12 | 5 | 16 | 10 | 6 | |||
P < 0.05 indicates significant association, I Informative cases, NG heterozygous without LOH (negative cases)
Fig. 2Box-and-whisker plot, representing the a mean and b median FAL index values for the PSAD in prostate cancer