| Literature DB >> 26426961 |
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Abstract
Entities:
Year: 2015 PMID: 26426961 PMCID: PMC4591008 DOI: 10.1371/journal.pone.0139268
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Overview of the number of peptides and the corresponding proteins as being identified in the individual MS-runs.
| Method | Sample ID | # peptide groups | # protein groups |
|---|---|---|---|
|
| 3_pTa | 5073 | 1096 |
| 11_pTa | 5269 | 1099 | |
| 16_pTa | 5725 | 1185 | |
| 19_pTa | 3931 | 937 | |
|
|
|
| |
| 9_pT2+ | 5360 | 1130 | |
| 12_pT2+ | 5112 | 1136 | |
| 15_pT2+ | 5516 | 1169 | |
| 17_pT2+ | 5485 | 1155 | |
|
|
|
| |
|
| 10 μg | 1859 | 664 |
|
| 6099 | 2064 |
Comparison of the quantification results at the peptide and protein level for identifications with conflicting expression trends between fractionated iTRAQ and LFQ
| Protein/ Peptide | Peptide Log2 Ratio (pT2+ vs. pTa) | Protein Log2 Ratio (pT2+ vs. pTa) | |||
|---|---|---|---|---|---|
| Protein Name | Peptide sequence used for quantification | iTRAQ + fractionation | LFQ | iTRAQ + fractionation | LFQ |
|
| eASYSLIR | -0.24 | 0.03 |
|
|
| mDAILTEAIk | -0,37 | 0.32 | |||
| tIPSWATLSASQLAR | -0.30 | 0.41 | |||
| SSAVDPEPQVK | - | 1.31 | |||
| LEDVLPLAFTR | - | 0.24 | |||
| GASGSFVVVQK | - | 5.12 | |||
|
| aYLQQLR | 0.01 | 0.61 |
|
|
| lIGNMALLPIR | -0.43 | -0.06 | |||
| lIGNmALLPIR | -0.34 | - | |||
|
| sIVEEIEDLVAR | 0,21 | 2.46 |
|
|
| eDQVIQLMNAIFSk | -0.36 | - | |||
| fELDTSER | 0.15 | - | |||
| nFESLSEAFSVASAAAVLSHNR | -0.12 | - | |||
| qEIQHLFR | 0.09 | - | |||
| yHVPVVVVPEGSASDTHEQAILR | -0.38 | 0.62 | |||
| LQVTNVLSQPLTQATVK | - | 0.33 | |||
| ISTEVGITNVDLSTVDKDQSIAPK | - | 1.78 | |||
| NPILWNVADVVIK | - | 3.65 | |||
| YIANTVELR | 0.06 | 3.15 | |||
|
| KDDEENYLDLFSHK | - | 0.39 |
|
|
| ILGPQGNTIK | - | 0.55 | |||
| DSLDPSFTHAMQLLTAEIEK | - | 2.42 | |||
| SGSMDPSGAHPSVR | 0.06 | 0.68 | |||
| qPPLPHR | -0.56 | - | |||
|
| SSQTSGTNEQSSAIVSAR | - | 0.27 |
|
|
| SQLNSQSVEITK | - | 0.25 | |||
| NDGVLLLQALTR | -0,23 | 2.44 | |||
| eQDLQLEELR | -0.47 | - | |||
| qSEDLGSQFTEIFIk | 0.31 | - | |||
| vASSTLLDDRR | -0.00007 | - | |||