Literature DB >> 26420879

Quantitative GSL-glycome analysis of human whole serum based on an EGCase digestion and glycoblotting method.

Jun-ichi Furukawa1, Shota Sakai2, Ikuko Yokota3, Kazue Okada3, Hisatoshi Hanamatsu2, Takashi Kobayashi4, Yasunobu Yoshida4, Kenichi Higashino4, Tomohiro Tamura5, Yasuyuki Igarashi2, Yasuro Shinohara1.   

Abstract

Glycosphingolipids (GSLs) are lipid molecules linked to carbohydrate units that form the plasma membrane lipid raft, which is clustered with sphingolipids, sterols, and specific proteins, and thereby contributes to membrane physical properties and specific recognition sites for various biological events. These bioactive GSL molecules consequently affect the pathophysiology and pathogenesis of various diseases. Thus, altered expression of GSLs in various diseases may be of importance for disease-related biomarker discovery. However, analysis of GSLs in blood is particularly challenging because GSLs are present at extremely low concentrations in serum/plasma. In this study, we established absolute GSL-glycan analysis of human serum based on endoglycoceramidase digestion and glycoblotting purification. We established two sample preparation protocols, one with and the other without GSL extraction using chloroform/methanol. Similar amounts of GSL-glycans were recovered with the two protocols. Both protocols permitted absolute quantitation of GSL-glycans using as little as 20 μl of serum. Using 10 healthy human serum samples, up to 42 signals corresponding to GSL-glycan compositions could be quantitatively detected, and the total serum GSL-glycan concentration was calculated to be 12.1-21.4 μM. We further applied this method to TLC-prefractionated serum samples. These findings will assist the discovery of disease-related biomarkers by serum GSL-glycomics.
Copyright © 2015 by the American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  biomarker; blood; diagnostic tools; endoglycoceramidase; gangliosides; glycolipids; glycomics; glycosphingolipid; lipidomics; mass spectrometry; thin-layer chromatography

Mesh:

Substances:

Year:  2015        PMID: 26420879      PMCID: PMC4655979          DOI: 10.1194/jlr.D062083

Source DB:  PubMed          Journal:  J Lipid Res        ISSN: 0022-2275            Impact factor:   5.922


  26 in total

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2.  A new liquid chromatography/tandem mass spectrometry method for quantification of gangliosides in human plasma.

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3.  Liquid chromatography/electrospray ionisation-tandem mass spectrometry quantification of GM2 gangliosides in human peripheral cells and plasma.

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Review 4.  Glycolipids of tumor cell membrane.

Authors:  S Hakomori
Journal:  Adv Cancer Res       Date:  1973       Impact factor: 6.242

5.  Distribution of glycosphingolipids in the serum lipoproteins of normal human subjects and patients with hypo- and hyperlipidemias.

Authors:  G Dawson; A W Kruski; A M Scanu
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6.  Qualitative and quantitative cellular glycomics of glycosphingolipids based on rhodococcal endoglycosylceramidase-assisted glycan cleavage, glycoblotting-assisted sample preparation, and matrix-assisted laser desorption ionization tandem time-of-flight mass spectrometry analysis.

Authors:  Naoki Fujitani; Yasuhiro Takegawa; Yohei Ishibashi; Kayo Araki; Jun-ichi Furukawa; Susumu Mitsutake; Yasuyuki Igarashi; Makoto Ito; Yasuro Shinohara
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Review 7.  Sphingolipid lysosomal storage disorders.

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8.  A glycolipid antigen associated with Burkitt lymphoma defined by a monoclonal antibody.

Authors:  E Nudelman; R Kannagi; S Hakomori; M Parsons; M Lipinski; J Wiels; M Fellous; T Tursz
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9.  Preparation and characterization of EGCase I, applicable to the comprehensive analysis of GSLs, using a rhodococcal expression system.

Authors:  Yohei Ishibashi; Utaro Kobayashi; Atsushi Hijikata; Keishi Sakaguchi; Hatsumi M Goda; Tomohiro Tamura; Nozomu Okino; Makoto Ito
Journal:  J Lipid Res       Date:  2012-07-15       Impact factor: 5.922

10.  Anti-ganglioside antibodies in amyotrophic lateral sclerosis revisited.

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Journal:  Glycoconj J       Date:  2018-09-08       Impact factor: 2.916

2.  Structural Insights into the Broad Substrate Specificity of a Novel Endoglycoceramidase I Belonging to a New Subfamily of GH5 Glycosidases.

Authors:  Yun-Bin Han; Liu-Qing Chen; Zhuo Li; Yu-Meng Tan; Yan Feng; Guang-Yu Yang
Journal:  J Biol Chem       Date:  2017-02-08       Impact factor: 5.157

3.  Comprehensive Identification of Glycosphingolipids in Human Plasma Using Hydrophilic Interaction Liquid Chromatography-Electrospray Ionization Mass Spectrometry.

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4.  Glycosphingolipid GM3 prevents albuminuria and podocytopathy induced by anti-nephrin antibody.

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Journal:  Sci Rep       Date:  2022-09-26       Impact factor: 4.996

Review 5.  Recent advances in the mass spectrometric analysis of glycosphingolipidome - A review.

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7.  Toolbox Accelerating Glycomics (TAG): Glycan Annotation from MALDI-TOF MS Spectra and Mapping Expression Variation to Biosynthetic Pathways.

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  7 in total

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