| Literature DB >> 26420301 |
Rania Kishk1, Nader Nemr2, Abeer Elkady3,4, Mohamed Mandour5, Mohamed Aboelmagd6, Nevene Ramsis7, Mohamed Hassan8, Nashaat Soliman9, Sayuki Iijima10, Shuko Murakami11, Yasuhito Tanaka12, Mostafa Ragheb13.
Abstract
BACKGROUND: Major hydrophilic region in genomic HBV extending from aa99 to aa169, clustered with a highly conformational epitope, is critical to the antigenicity of hepatitis B surface antigen (HBsAg) and may affect the diagnosis of HBV in HBV screening test. So, this study aimed to characterize variants of S gene product of hepatitis B virus (HBV) isolated from patients with overt or occult HBV infection in north-eastern Egypt.Entities:
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Year: 2015 PMID: 26420301 PMCID: PMC4588243 DOI: 10.1186/s12985-015-0389-y
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
General characteristics of the studied cohort
| Total ( | HBsAg-/ | HBsAg+ ( |
| |
|---|---|---|---|---|
| Age (Years) Mean ± SD | 29.1 ± 7.1 | 32.9 ± 6.1 | 28.0 ± 7 | NS |
| Gender (M) | 118 (93.7) | 44 (100 %) | 74 (90 %) | 0.049 |
| ALT (IU/L) | 18.8 ± 10.6 | 18.6 ± 13.9 | 19 ± 7.2 | NS |
| HBV DNA S region (+) | 84 (66.7 %) | 10 (22.7 %) | 74 (90 %) | 0.0001 |
| MHR Substitutions (%) | 34/84 (40.5) | 7/10 (50)a | 27/74 (37.8) | 0.5 |
| T115S | 7/84 (8.3) | 0 | 7/74 (9.5) | NS |
| P120T/S | 2/84 (2.3) | 0 | 2/74 (2.7) | NS |
| T125M | 2/84 (2.3) | 2/10 (20) | 0 | 0.01 |
| P127T | 1/84 (1.2) | 1/10 (10) | 0 | NS |
| Q129R | 9/84 (10.7) | 4/10 (40) | 5 (5.8) | 0.01 |
| K141R | 1/84 (1.2) | 0 | 1 (1.4) | NS |
| S143L/T | 12/84 (14.3) | 0 | 12 (16.2) | NS |
aTwo MHR mutants were present simultaneously in 2 cases; OCU18 and OCU158
Fig. 1Alignment of amino acid sequences of the HBV partial surface gene encompassing the “a” determinant region isolated from cases with overt HBV infection a and from cases with occult HBV infection b. The detected sequences were aligned with respect to a consensus sequence of HBV genotype D retrieved from DDBJ/GenBank database. Dots in alignment indicate identity with the consensus sequence of genotype D. First and second loop positions are underlined in the consensus sequence of the genotype
Characteristics of blood donors negative for HBsAg and positive for anti-HBc/anti-HBs
| Total ( | Anti-HBc positive/anti-HBs positive ( | Anti-HBc positive/anti-HBs negative ( |
| |
|---|---|---|---|---|
| Age (Mean ± SD ) | 30 ± 7.1 | 32.3 ± 6.7 | 28.3 ± 7.2 | 0.055 |
| ALT (U/L) | 20.5 ± 15.9 | 20.9 ± 15.9 | 20.2 ± 16.2 | NS |
| HBV DNA S region (+) | 10 (22.7 %) | 5 (29.4 %) | 5(18.5 %) | NS |
| MHR substitutions | ||||
| T125M | 2/10 (20 %) | 1/5 | 1/5 | NS |
| Q129R | 4/10 (40 %) | 3/5 | 1/5 | NS |
Descriptive analysis of cases with occult HBV infection
| Sample ID | Age | ALT (IU/L) | Anti-HBs | Anti-HBs level (mIU/L) | MHR amino acid substitutions | HBV DNA (core region) | HBV DNA Log (copy/ml) |
|---|---|---|---|---|---|---|---|
| OCU234 | 38 | 22 | (+) | 23.5 | - | (+) | 2.8 |
| OCU340 | 32 | 16 | (+) | 12.4 | Q129R | (+) | 2.7 |
| OCU18 | 28 | 12 | (+) | 1000.0 | T125M, Q129R | (−) | <2.0 |
| OCU43 | 31 | 23 | (+) | 147.2 | - | (+) | 2.3 |
| OCU243 | 38 | 9 | (+) | 12.2 | Q129R | (+) | 2.8 |
| OCU309 | 45 | 17 | (−) | 0.1 | Q129R | (−) | <2.0 |
| OCU302 | 33 | 17 | (−) | 0.8 | - | (+) | 2.5 |
| OCU274 | 32 | 12 | (−) | 9.3 | - | (+) | 4.5 |
| OCU158 | 24 | 17 | (−) | 0.1 | T125M | (+) | <2.0 |
| OCU311 | 28 | 12 | (−) | 2.9 | - | (−) | 2.2 |